Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K02
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   3.2  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   5.5  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 156  VVENADSADPFFAQPTVGNGYEPIDNRPYIVNP 254
            +++  +SAD  +A P + +G  P+  +  IVNP
Sbjct: 1251 LIQPCESADKPYALPLLDSGMVPVSTQLAIVNP 1283


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 216 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGPTLLQAY 353
           +E +D  PY++N P+     G   E     A    R QGP+LL+ Y
Sbjct: 734 HEIVDEEPYLLNDPEKELELGCTLE----SALKRARAQGPSLLEDY 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,167
Number of Sequences: 5004
Number of extensions: 41260
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)