Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J24
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   5.1  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    26   6.7  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 143 GESDPRNPTASSC*KTRCGESQRGKEAKSKTPKAGQXGGSR*S*KVETG 289
           GES+  N T++S  K R     + K+AK +T K+G    +  S K+  G
Sbjct: 297 GESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLG 345


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 164 DSLGLTRHIENTQKLCRPRPSXENRDTNQI-KRYEES*RKSKIL 36
           D+L LT        LC   P  E  D+N I KR + +  K K +
Sbjct: 151 DTLSLTEKFSRFMSLCETYPELELMDSNNIQKRGKNAQGKKKFI 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,878
Number of Sequences: 5004
Number of extensions: 18556
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)