Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J23
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 644  KKXPPPPPPP 673
            ++ PPPPPPP
Sbjct: 1352 QQQPPPPPPP 1361



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 644  KKXPPPPPPP 673
            ++ PPPPPPP
Sbjct: 1353 QQPPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 726 PXPXPPPXXPXXXPPXXPPXXPPXXXXXXPPXPPXPPP 839
           P P   P  P    P  P   PP      P  PP  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPP------PGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 726 PXPXPPPXXPXXXPPXXPP 782
           P   PPP  P   PP   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 632 PPXXKKXPPPPPP 670
           PP  K  PPPPPP
Sbjct: 338 PP--KPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 864 PPXXXPPPPP 893
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 728 PXPXPPXPPP 757
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 860 PPXPXXPPXPP 892
           PP P  PP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 647 KXPPPPPPP 673
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 649 KXXPPPPPP 675
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,060
Number of Sequences: 438
Number of extensions: 10370
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)