Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J22
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    44   3e-05
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    35   0.017
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.8  

>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 11/64 (17%)
 Frame = +1

Query: 472 GADIVYVITTEDAAPVIKIYSPDLIVYPFLNKKYAS-----------KISSLLPKMDAIV 618
           G+D  ++   ++AA VIK YSPDLIV+PFL +K  +            I  ++ ++ AIV
Sbjct: 58  GSDQSHIFCEKEAANVIKSYSPDLIVHPFLREKDKAGPEDSVDKCFELIKPMMGRLHAIV 117

Query: 619 IGPG 630
           IGPG
Sbjct: 118 IGPG 121



 Score = 32.7 bits (71), Expect = 0.068
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 326 DILKKLTSNIVPTLNGKSKGDLGRIGIIGGSVEYTG 433
           ++L ++   I P L+   KG  GR+G+ GG   YTG
Sbjct: 10  NLLTRVKRIIPPLLDTFHKGQAGRVGVFGGCQHYTG 45


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 341 LTSNIVPTLNGKSKGDLGRIGIIGGSVEYTGGSVLLS 451
           +T  ++P    K+KGD+  +G I G   Y GGSV  S
Sbjct: 124 MTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSVYCS 160


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -1

Query: 375 FPLSVGTILLVNFFKISLEVRKFI-LHSLPLVIWKVNKITCKITRIILKLGVIINDMNYK 199
           F LS    +L +F K S+++       S  +  +  + I   +T  +  L   +ND++Y+
Sbjct: 216 FRLSGPNEVLESFAKNSVDIEMLKPFVSQRIDAFSQDPILLAVTAKLSALQKKVNDVSYR 275

Query: 198 FRTLCVTIRGAK 163
           F+T+  ++ GAK
Sbjct: 276 FKTISSSLYGAK 287


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 266 LFTFQITNGNECKMNFLTSKDILKKLTSNIVPTLNG 373
           +  F+I +G  C+++ LTS +       + +P LNG
Sbjct: 34  ILNFEIPSGVSCQLSSLTSSNFASGCKISAMPILNG 69


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = -1

Query: 555  WID-YEIRTVNFNNWRCVFSSNYVNYIRSC-P*KQQWLRSTEPPVYSTDPPIIPILPRSP 382
            W D Y    +NF      F    +N++RS    K +W+  +             +  R  
Sbjct: 1437 WFDGYVTALLNFEYEGYGFLRCQINFVRSVMTTKNEWIEVSNK-----------LFERGH 1485

Query: 381  FDFPLSVGTILLVNFFKISLEVRKFILHSLPLVIWKVNK 265
            F   +++   L + F+++     + +LHSL L IWK  K
Sbjct: 1486 FLKRIAMNNYLCLYFWQVLDACPRNVLHSLSLEIWKCYK 1524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,935
Number of Sequences: 5004
Number of extensions: 49374
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)