Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_J20
(1459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.24
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 33 0.56
12_02_1174 - 26696869-26698191 32 0.99
08_01_0059 - 394001-394708 31 1.7
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 31 1.7
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 30 4.0
02_03_0120 + 15463163-15465250 30 4.0
03_01_0515 - 3864796-3865425 30 5.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 7.0
09_04_0430 + 17502387-17503505 29 7.0
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 7.0
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 29 7.0
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 9.2
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.3 bits (75), Expect = 0.24
Identities = 18/57 (31%), Positives = 21/57 (36%)
Frame = -2
Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXPXXXPPXEX*RGXXAPSXPRXXXXPPXXXXXG 1
P PA P PP P+ PP P PP +G P P+ PP G
Sbjct: 318 PPKPAAAAPPPPPP--PKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Score = 29.1 bits (62), Expect = 9.2
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = -2
Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXP--XXXPPXEX*RGXXAPSXPRXXXXPP 19
P P + P PP P P PP P PP +G P P+ P
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 33.1 bits (72), Expect = 0.56
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -2
Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXPXXXPP 79
P PAR P PP P P PP T P PP
Sbjct: 38 PPPPARHRAPSPPRPPP-PPPPPTQPAPPPP 67
>12_02_1174 - 26696869-26698191
Length = 440
Score = 32.3 bits (70), Expect = 0.99
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXPXXXPP 79
P P R PP P+P PP T P PP
Sbjct: 192 PPPPTRPPSVKPPVVQPKPQPPPTLPPPSPP 222
>08_01_0059 - 394001-394708
Length = 235
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = -2
Query: 483 IPXSPPXRXSVLPPXXXXPXXXRXPPXLXNXRXRXTXPPPSXXPXXXXXPFPXXCXXXPP 304
+P PP R + PP P R PP PPP P P P PP
Sbjct: 1 MPPPPPPRRAPPPPATPPPPPRRAPP----PPSPPIRPPPPPTPRPYAPPPPSHPLAPPP 56
Query: 303 P 301
P
Sbjct: 57 P 57
Score = 30.3 bits (65), Expect = 4.0
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Frame = -2
Query: 171 PXXPARXLCPXP--PXXXPRPXPPXTXPXXXPPXEX*RGXXAPSXPRXXXXPP 19
P P R P P P PR PP P PP AP P PP
Sbjct: 3 PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPP 55
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 31.5 bits (68), Expect = 1.7
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = -1
Query: 151 PVPXXPPXPAPPPAXXYXXXXXXPX*XXKGAXGXLXPPXXXXP 23
P+P PP P PPP P G+ G PP P
Sbjct: 306 PIPPPPPPPPPPPMPRSRSASPSPSTSSSGSAGPPAPPPPPPP 348
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 30.3 bits (65), Expect = 4.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 162 PARXLCPXPPXXXPRPXPPXTXPXXXPPXE 73
P LCP PP P P PP P PP E
Sbjct: 32 PFTFLCPPPPPPPPPPPPP---PPPPPPLE 58
>02_03_0120 + 15463163-15465250
Length = 695
Score = 30.3 bits (65), Expect = 4.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 177 TFPXXPARXLCPXPPXXXPRPXPPXTXPXXXPP 79
++ P + + P PP P P PP P PP
Sbjct: 281 SYAPPPTKYIGPMPPNNQPLPPPPSPSPSPPPP 313
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.9 bits (64), Expect = 5.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -2
Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXPXXXPP 79
P P+ P PP P P PP P PP
Sbjct: 74 PPPPSVTSSPPPPPLPPPPPPPAASPPPPPP 104
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 7.0
Identities = 36/155 (23%), Positives = 38/155 (24%), Gaps = 1/155 (0%)
Frame = -2
Query: 480 PXSPPXRXSVLPPXXXXPXXXRXPPXLXNXRXRXTXPPPSXXPXXXXXPFPXXCXXXPPP 301
P PP + L P P PP L N PPP P P P P
Sbjct: 588 PPPPPPLPNCLVPSPPPPPPP--PPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSL 645
Query: 300 XXRVXXLXVXXXXGXXXXXXXXXXNSXXXXXXXPRXLXXXXTFPXXPARXLCPXPPXXXP 121
R+ G P P P P PP
Sbjct: 646 PNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPP--PLPPANRT 703
Query: 120 R-PXPPXTXPXXXPPXEX*RGXXAPSXPRXXXXPP 19
P P P PP R PS P PP
Sbjct: 704 NGPGVPSAPPPPPPPPPANRS-NGPSAPAPPLPPP 737
>09_04_0430 + 17502387-17503505
Length = 372
Score = 29.5 bits (63), Expect = 7.0
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = -2
Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXPXXXPPXEX*RGXXAPSXPRXXXXPP 19
P P P PP P+ PP P PP AP P PP
Sbjct: 174 PTPPRAAPLPTPPRAPPQSTPPRAAPQSTPPQR-----VAPQPPATAAAPP 219
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.5 bits (63), Expect = 7.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -2
Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXPXXXPPXE 73
P P P PP P P PP P PP E
Sbjct: 425 PPPPPLPPPPPPPPPPPPPLPPNMPPPLPPPPE 457
>01_06_1678 - 39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 29.5 bits (63), Expect = 7.0
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = -1
Query: 1387 PSXPXTTP-HTXHPXXHXAPXPPLPARXXCGVPXXXEXXXGXERGXXPXXPPTHXP 1223
P P P H H P PP P VP + ER P PP P
Sbjct: 70 PPTPSPVPEHLHHHPPPPPPVPPCPPNATHVVPCHEDDELSGERHCPPRPPPPPPP 125
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.1 bits (62), Expect = 9.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 144 PXPPXXXPRPXPPXTXPXXXPPXEX*RGXXAPSXPR 37
P PP P P PP PP +G P+ P+
Sbjct: 356 PPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPPK 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,063
Number of Sequences: 37544
Number of extensions: 240746
Number of successful extensions: 3883
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3198
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4640843200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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