Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J20
         (1459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    33   0.51 
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    30   3.6  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    30   4.7  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXPXXXPP 79
           P  PA+  CP PP   P P PP   P   PP
Sbjct: 58  PPCPAQ-FCPPPPICPPPPPPPMPCPPPPPP 87


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 171 PXXPARXLCPXPPXXXPRPXPPXTXPXXXPPXE 73
           P  P R  CP P    P P PP   P    P +
Sbjct: 125 PPNPPRTCCPPPTPAAPPPPPPPPPPAPEAPTQ 157


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 18/60 (30%), Positives = 18/60 (30%)
 Frame = -2

Query: 480 PXSPPXRXSVLPPXXXXPXXXRXPPXLXNXRXRXTXPPPSXXPXXXXXPFPXXCXXXPPP 301
           P  PP      PP    P     PP           PPP   P     P P  C   PPP
Sbjct: 29  PCPPPPPPMCAPPPLPCPPPPICPPQFC--------PPPPMCPPPPPPPPPPMCPPPPPP 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,032,132
Number of Sequences: 27780
Number of extensions: 125977
Number of successful extensions: 1059
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4173077878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)