Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_J19
(942 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 34 0.17
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 32 0.52
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 31 1.6
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 1.6
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 30 2.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.8
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 30 2.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 2.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 2.8
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 29 3.6
U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific... 29 3.6
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 4.8
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 29 4.8
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.4
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 28 8.4
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 33.9 bits (74), Expect = 0.17
Identities = 31/126 (24%), Positives = 34/126 (26%), Gaps = 1/126 (0%)
Frame = -3
Query: 796 GVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGG-GGEXXDGXKGXGDXXDXXXXGXX 620
G +GG G GG G G G + G GG GG G G G G
Sbjct: 93 GYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGY 152
Query: 619 GXXXXXXXXMQXXVGXXGXRXX*XXXXXGXXGGXXXRAGXXGGXXXXXEXRXFXXXGXGX 440
G G G GG G GG + G G
Sbjct: 153 GGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGG 212
Query: 439 GXXXGG 422
G GG
Sbjct: 213 GGYGGG 218
Score = 28.7 bits (61), Expect = 6.4
Identities = 29/121 (23%), Positives = 32/121 (26%)
Frame = -3
Query: 787 KGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGDXXDXXXXGXXGXXX 608
+GG G G G GQ + G GG G G G G D G G
Sbjct: 76 RGGYGGSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGD-GGGGYGGYGG 134
Query: 607 XXXXXMQXXVGXXGXRXX*XXXXXGXXGGXXXRAGXXGGXXXXXEXRXFXXXGXGXGXXX 428
M G G G G G GG + G G G
Sbjct: 135 GGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMG 194
Query: 427 G 425
G
Sbjct: 195 G 195
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Frame = -3
Query: 802 FWGVPKGGV------GXXDXXXGGSGRGXXGQXXFXGXLXXA--GGGGEXXDGXKGXGDX 647
F G GG+ G D GG G G G + G + GGGG G G GD
Sbjct: 162 FGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDG 221
Query: 646 XDXXXXGXXG 617
G G
Sbjct: 222 GYGPSGGYGG 231
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 32.3 bits (70), Expect = 0.52
Identities = 13/43 (30%), Positives = 16/43 (37%)
Frame = +3
Query: 618 PXXPXXXXSXXSPXPFXPSXXSPPPPAXXNXPXXHXXPXXPLP 746
P P + +P P+ PPPP P H P P P
Sbjct: 113 PPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAP 155
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -3
Query: 799 WGVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGDXXDXXXXGXX 620
WG GG GG+G G G G GGGG G G G G
Sbjct: 72 WGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGG 131
Query: 619 G 617
G
Sbjct: 132 G 132
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/61 (32%), Positives = 22/61 (36%)
Frame = -3
Query: 835 SWXSXGEXXXYFWGVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGX 656
+W G G GG G GG GRG G G GGGG G +G
Sbjct: 80 NWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGG----GGGGGRGGGGGGRGGGGRGR 135
Query: 655 G 653
G
Sbjct: 136 G 136
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +3
Query: 627 PXXXXSXXSPXPFXPSXXSPPPPAXXNXPXXHXXPXXPLPLPP 755
P + P P PS P PA + P P P P+PP
Sbjct: 31 PDELTTASHPQPTHPSAPQDPSPAVPSTPVRVPYPTAPPPIPP 73
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -3
Query: 784 GGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXG 653
GG G GG GRG G G GGGG G +G G
Sbjct: 132 GGGGRGGGGRGGDGRGPPGSNG-GGDWGGNGGGGRGGGGGRGGG 174
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/61 (32%), Positives = 22/61 (36%)
Frame = -3
Query: 799 WGVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGDXXDXXXXGXX 620
WG GG G GG GRG G+ + G GGGG G G G
Sbjct: 78 WGGNGGGRGDWGGN-GGGGRGGGGRGDWGG--NNNGGGGNWGGGGNNDGGWGGNNGGGGG 134
Query: 619 G 617
G
Sbjct: 135 G 135
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 784 GGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGD 650
GG G GG+G G G F GG G G G GD
Sbjct: 86 GGFGDNGGLRGGNGGGRGGNGGFDDNGGGRGGNGGGRGGTGGFGD 130
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = -3
Query: 796 GVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGDXXDXXXXGXXG 617
G +GG G D GG G G+ G GG G G G G + G G
Sbjct: 99 GGGRGGNGGFDDNGGGRGGNGGGRGGTGGFGDNGGGRGGNGGGRGGNGGGNNGGGRGGNG 158
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 654 PXPFXPSXXSPPPPAXXNXPXXHXXPXXPLPLPP 755
P P P PPPP P P P P PP
Sbjct: 47 PPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.8
Identities = 31/127 (24%), Positives = 33/127 (25%)
Frame = -3
Query: 784 GGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGDXXDXXXXGXXGXXXX 605
GG G GG G G G G GGGG G G G G
Sbjct: 81 GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 140
Query: 604 XXXXMQXXVGXXGXRXX*XXXXXGXXGGXXXRAGXXGGXXXXXEXRXFXXXGXGXGXXXG 425
G G G GG G GG G G G G
Sbjct: 141 GGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPS--GGGGCGGGGSSG 198
Query: 424 GXXWXVS 404
G + V+
Sbjct: 199 GGGYAVA 205
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.8
Identities = 31/127 (24%), Positives = 33/127 (25%)
Frame = -3
Query: 784 GGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGDXXDXXXXGXXGXXXX 605
GG G GG G G G G GGGG G G G G
Sbjct: 81 GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 140
Query: 604 XXXXMQXXVGXXGXRXX*XXXXXGXXGGXXXRAGXXGGXXXXXEXRXFXXXGXGXGXXXG 425
G G G GG G GG G G G G
Sbjct: 141 GGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPS--GGGGCGGGGSSG 198
Query: 424 GXXWXVS 404
G + V+
Sbjct: 199 GGGYAVA 205
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = -3
Query: 796 GVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGG--EXXDGXKGXG 653
G +GG G GG G G+ F G GGGG DG +G G
Sbjct: 292 GGERGGRGGRGGFGGGRGGPMGGRGGFGGDRGGYGGGGGRGGFDGGRGGG 341
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 796 GVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXG 653
G +GG G + G +G GQ + G GGGG G G G
Sbjct: 208 GGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQG 255
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 799 WGVP--KGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGE 680
WG P +GG G GG G+G G + G GGGG+
Sbjct: 191 WGGPAQRGGPGAYGGP-GGGGQGGYGGGNYGGGWGQQGGGGQ 231
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 796 GVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXG 653
G +GG G + G +G GQ + G GGGG G G G
Sbjct: 246 GGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQG 293
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 799 WGVP--KGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGE 680
WG P +GG G GG G+G G + G GGGG+
Sbjct: 229 WGGPAQRGGPGAYGGP-GGGGQGGYGGGNYGGGWGQQGGGGQ 269
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -3
Query: 796 GVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGG 683
G P GG G GG G G GQ + G GGGG
Sbjct: 325 GGPVGG-GGGGAKSGGGGGGIPGQSVYMGAGGGGGGGG 361
>U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific
family, class qprotein 3 protein.
Length = 265
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -3
Query: 796 GVPKGGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGG 683
G P GG G GG G G GQ + G GGGG
Sbjct: 219 GGPVGG-GGGGAKSGGGGGGIPGQSVYMGAGGGGGGGG 255
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 784 GGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXG 653
GG G GG G G G G GGGG G G G
Sbjct: 63 GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCG 106
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 654 PXPFXPSXXSPPPPAXXNXPXXHXXPXXPLPLPP 755
P PF P PP P H P LP PP
Sbjct: 50 PPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPP 83
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 784 GGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXG 653
GG G GG G G G G GGGG G G G
Sbjct: 88 GGCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGG 131
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -3
Query: 784 GGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGD 650
GG G GG G G G GGGG G G G+
Sbjct: 792 GGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGN 836
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/76 (22%), Positives = 21/76 (27%)
Frame = +2
Query: 524 PPXPPXXXPLXXXXPXLPNXALHXXXPPXXXXXXPXXPXIXXIXXPLXPIXXFXPXXXXX 703
PP PP P+ P P PP P P + P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 323
Query: 704 QSXPKXLLXXXPPPTP 751
+ P + PPP P
Sbjct: 324 RFGPPGMGGMPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/76 (22%), Positives = 21/76 (27%)
Frame = +2
Query: 524 PPXPPXXXPLXXXXPXLPNXALHXXXPPXXXXXXPXXPXIXXIXXPLXPIXXFXPXXXXX 703
PP PP P+ P P PP P P + P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 333
Query: 704 QSXPKXLLXXXPPPTP 751
+ P + PPP P
Sbjct: 334 RFGPPGMGGMPPPPPP 349
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/98 (24%), Positives = 27/98 (27%)
Frame = -3
Query: 784 GGVGXXDXXXGGSGRGXXGQXXFXGXLXXAGGGGEXXDGXKGXGDXXDXXXXGXXGXXXX 605
GG+ GG G G G F G GGG G G G+ D
Sbjct: 44 GGLASNFFGGGGGGGGGGGGGGFGGGNGGFGGGSNYDQG--GNGNSGDQQKRKRDMAKDL 101
Query: 604 XXXXMQXXVGXXGXRXX*XXXXXGXXGGXXXRAGXXGG 491
V G + G GG G GG
Sbjct: 102 IGGIFDNVVNRKGKKEQDNYGGGGNYGGGGGNQGGGGG 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,427,133
Number of Sequences: 27780
Number of extensions: 119471
Number of successful extensions: 1187
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -