Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J18
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   105   6e-24
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   104   1e-23
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    62   7e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    45   2e-05
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   3.4  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   3.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.9  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  105 bits (253), Expect = 6e-24
 Identities = 54/119 (45%), Positives = 73/119 (61%)
 Frame = +1

Query: 334 PAAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVFGXN 513
           P +++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V    
Sbjct: 63  PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKI 122

Query: 514 PQAR*PVYRVCXDXXXXXXXXXXXXXXXTSLIDGXSSVDYGXKSKLEXAIYPXPXGSTA 690
            +       +                    L++   +++Y  KSKL+ ++YP P  ST+
Sbjct: 123 RRIADNCSGLQGFLVFHSFGGGTGSGFGALLLE-RLAMEYTKKSKLQFSVYPAPQVSTS 180



 Score = 82.2 bits (194), Expect = 9e-17
 Identities = 35/51 (68%), Positives = 38/51 (74%)
 Frame = +2

Query: 173 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 325
           GQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK
Sbjct: 10  GQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  104 bits (250), Expect = 1e-23
 Identities = 50/119 (42%), Positives = 73/119 (61%)
 Frame = +1

Query: 334 PAAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVFGXN 513
           P +++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D V    
Sbjct: 67  PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126

Query: 514 PQAR*PVYRVCXDXXXXXXXXXXXXXXXTSLIDGXSSVDYGXKSKLEXAIYPXPXGSTA 690
            +       +                    L++   +++YG KS L+ ++YP P  ST+
Sbjct: 127 RRMADNCSGLQGFLVFHSFGGGTGSGLGALLLE-RLNMEYGKKSNLQFSVYPAPQVSTS 184



 Score = 75.8 bits (178), Expect = 7e-15
 Identities = 38/56 (67%), Positives = 40/56 (71%), Gaps = 5/56 (8%)
 Frame = +2

Query: 173 GQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAGK 325
           GQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSETG GK
Sbjct: 10  GQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGK 64


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +1

Query: 334 PAAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 501
           P AV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D V
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 173 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 325
           GQ G Q+G A W     EHG+   G      T     +  N +F+E   GK
Sbjct: 10  GQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
 Frame = +1

Query: 334 PAAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGH---YTIGKEIVDL 498
           P A+ +DLEP VV+ + + TY  L++PE ++  K    A NN+A G+     I ++I+D+
Sbjct: 62  PRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERIFEDIMDM 121

Query: 499 V 501
           +
Sbjct: 122 I 122



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 21/47 (44%), Positives = 28/47 (59%)
 Frame = +2

Query: 173 GQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 313
           GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++
Sbjct: 11  GQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +3

Query: 159 SGTRLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASS 329
           S T +    S S + +      ST SSL +    ++PS   T  ST SSA P   SS
Sbjct: 151 SSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 384 ADLINNSRFKIDEDSSGVR-SLPAPVSLKKVLKESSP 277
           AD+IN SR+ ID  S     S   P+SL    KE  P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 561 RSGILADPVHWSASLRIXSKNQIYDFLSN 475
           ++ +L  P  +SA +    KNQIYD LSN
Sbjct: 589 KTTVLHGPGRFSAQVERMLKNQIYDKLSN 617


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 244 WPDAHRQDHRGWRRFFQHFLQR 309
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,519
Number of Sequences: 5004
Number of extensions: 55217
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)