Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_J17
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 161 1e-40
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 78 2e-15
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 54 4e-08
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 38 0.001
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.69
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 29 0.91
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 26 8.5
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 8.5
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 161 bits (391), Expect = 1e-40
Identities = 68/129 (52%), Positives = 99/129 (76%)
Frame = +1
Query: 187 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 366
GT+I A + GV++ ADSRTT GAYIANRVTDKLT++TD I+CCRSGSAADTQ +AD++
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 367 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGM 546
Y+L+ ++++ G P V TAA + E+CY ++ L AG++VAG+D+K G +YSIP+GG
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 547 VQRPAVSLG 573
+ + +++G
Sbjct: 144 LHKQPLAIG 152
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 77.8 bits (183), Expect = 2e-15
Identities = 41/133 (30%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
Frame = +1
Query: 181 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 360
STGT+I+ +V+GAD+R T G IA++ KL I+ I+C +G+AADT+ +
Sbjct: 33 STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTS 92
Query: 361 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 540
+++ ++ H + P V TA + ++ + Y+ + A +++ G+D KG +++I
Sbjct: 93 MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAH 151
Query: 541 GMVQR-PAVSLGA 576
G + P V+LG+
Sbjct: 152 GSSDKLPYVALGS 164
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 53.6 bits (123), Expect = 4e-08
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +1
Query: 187 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 366
GT+ +A + G+V+ DSR + G IA++ K+ +I + +G AAD Q ++
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120
Query: 367 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 543
H++ + V A+ I + Y+Y+ L G ++AG K G +Y I G
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAG-TGKGGTALYYIDSDG 179
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 175 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 354
P TG+S++A +F GV+I AD+ + G+ ++LTK+ D G +D Q I
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.69
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 214 DGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCR 324
+ G+V+G DSR +Y+ +T+ T TDQI R
Sbjct: 521 ENGIVLGVDSRKKINSYVEKSLTEDETD-TDQIISSR 556
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.91
Identities = 17/78 (21%), Positives = 33/78 (42%)
Frame = +1
Query: 187 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 366
GT+ +A + +VIG + + + K+ + + + +G AD + + D
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 367 TYHLNFHKMELGDPPLVE 420
HK+ L DP +E
Sbjct: 89 RVEAQNHKLNLADPVSIE 106
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 483 FSCWMGQKERSSNLLHTYWWYGA 551
F+ W+G S +L H +W +GA
Sbjct: 511 FAWWIGYGPHSFHLYHWWWTWGA 533
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 406 PPLVETAAAIFRELC 450
PPL++T +++F ELC
Sbjct: 284 PPLIQTLSSLFSELC 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,334
Number of Sequences: 5004
Number of extensions: 58345
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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