Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J16
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    34   0.12 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.5  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    28   7.9  

>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 678 NPGRLTGIPCXPLXSPSGKPWXPFPS 755
           NPG+ TG+PC P+  P  KP  P P+
Sbjct: 138 NPGKPTGLPCDPVTVPPCKPCPPGPA 163


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 764 PPGXVXXTSGXKVPSXPXPGRCXCPKXP 847
           PPG +   SG   P  P PG C  P  P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPP 774


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 764 PPGXVXXTSGXKVPSXPXPGRCXCPKXP 847
           PPG +   SG   P  P PG C  P  P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPP 774


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 764 PPGXVXXTSGXKVPSXPXPGRCXCPKXP 847
           PPG +   SG   P  P PG C  P  P
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPP 357


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 678 NPGRLTGIPCXPLXSPSGKPWXPFPS*XHXPVXXSQLPG 794
           NPGR    PC P+  P   PW P P     P      PG
Sbjct: 128 NPGRPPQQPCEPITPP---PWKPCPQGPPGPPGPPGPPG 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,583
Number of Sequences: 27780
Number of extensions: 261091
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)