Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J13
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.006
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.16 
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    27   3.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.0  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   7.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 33/118 (27%), Positives = 38/118 (32%), Gaps = 7/118 (5%)
 Frame = +1

Query: 346 PLPXRLXXAPGIGPRX*XNFRAXXFXP-PXKAXPXXXXPXXPRXXXXXXXXXSLSQXSPA 522
           P P R   + G  P    + RA    P P  A P    P  P                P+
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422

Query: 523 TPPLXPXFX------GLPXGXPLXPXXKXRXPLXPHHPSXSGAXXPPPXXPAXXAPXP 678
            PP  P          LP G P  P      P+ P  P  +G    PP  PA  AP P
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP--PLPAGMPAAPPLPPAAPAPPP 478



 Score = 29.9 bits (64), Expect = 0.48
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +1

Query: 499 SLSQXSPATPPLXPXFX---GLPXGXPLXPXXKXRXPLXPHHPSXSGAXXPPPXXP 657
           SL   +PA PPL P       LP G P  P      PL P  P+   A  P P  P
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAP------PLPPAAPAPPPAPAPAPAAP 487



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/58 (25%), Positives = 18/58 (31%)
 Frame = +1

Query: 505 SQXSPATPPLXPXFXGLPXGXPLXPXXKXRXPLXPHHPSXSGAXXPPPXXPAXXAPXP 678
           S  S   PP  P         PL P  +   P  P   + S    PPP   +     P
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP 388


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 22/58 (37%), Positives = 25/58 (43%)
 Frame = -3

Query: 578 GXRGXPXGRPXKXGXRGGVAGEXWERXXGGXGPGGXRGXXGXXXXGXAFXGGXKXXAR 405
           G R  P GR  + G RGG  G       GG G G  RG  G    G  F GG +  +R
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGS-----RGGFG-GNSRGGFGGGSRG-GFGGGSRGGSR 179


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 225 LEKAYHFAMKCFLLIWCYLQYFPLQLLKLFHSHCSGKIYLIQDKPEXRLFSLLADI 58
           +EK  H      ++I CY ++ PL         C   I  + D+     +SLLA +
Sbjct: 154 VEKYAHLLAISIVVIVCYFKHLPLLPWTFTVEACLFSIQFVLDRNNGPSYSLLASL 209


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +1

Query: 520  ATPPLXPXFXGLPXGXPLXPXXKXRXPLXPHHPSXSGAXXPPPXXPAXXAPXP 678
            +TPP+     G P   P  P      P     P+ SGA  PP   P+   P P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSI---PAPSGA--PPVPAPSGIPPVP 1095


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 405 PGPXFXTPXKSXPXXPXPXXSPGPPXPXPP 494
           P P F  P  + P    P     PP P PP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +1

Query: 562 GXPLXPXXKXRXPLXPHHPSXSGAXXPPPXXPAXXAPXP 678
           G P+ P      P+ P  P+   A  P P  P   A  P
Sbjct: 499 GMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGP 537


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = +3

Query: 405 PGPXFXTPXKSXPXXPXPXXSP---GPPXPXPP 494
           P P    P  +    P P  +P   GPP P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,815
Number of Sequences: 5004
Number of extensions: 30539
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)