Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J12
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1022 - 8815675-8816809,8819696-8819907                           31   1.2  
11_06_0610 - 25449085-25453284                                         29   3.7  
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909...    29   6.4  
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041...    29   6.4  
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910...    28   8.5  
08_02_0640 - 19636968-19638230                                         28   8.5  
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883     28   8.5  

>07_01_1022 - 8815675-8816809,8819696-8819907
          Length = 448

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 413 ANKNAPATIDLNRPIGGRSGMTASGSGVWDLXKXXHFSAXGMVSKE----FXHXRPDVG 577
           A  + P  + L+RP GG+S   + GS VW       ++A G   KE      + RPD G
Sbjct: 59  AGIDPPRRLILDRPGGGKSCNYSEGSWVWAPGHGRRYNATGCNVKESHDCIRNGRPDTG 117


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/48 (50%), Positives = 29/48 (60%)
 Frame = -1

Query: 366  KTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLS 223
            K+L P A PVSLP   +K SL  P  P +P S  P V K+LPPP  +S
Sbjct: 1262 KSLPPPA-PVSLPPPPVK-SL--P--PPAPVSLPPPVVKSLPPPAPVS 1303


>11_04_0258 +
           15489733-15490054,15490150-15490339,15490438-15490910,
           15501203-15501513
          Length = 431

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 428 PATIDLNRPIGGRSGMTASGS 490
           PA+ D++RPIGG +  TA+GS
Sbjct: 275 PASSDVDRPIGGSALATAAGS 295


>02_04_0621 -
           24502383-24502476,24502532-24504015,24504125-24504177,
           24504871-24504984,24505068-24505202,24505960-24506055,
           24506692-24506827
          Length = 703

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 25/70 (35%), Positives = 29/70 (41%)
 Frame = -1

Query: 342 PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGMSP*GLPADRVIFR 163
           P S+P  S   S+  P  P+ PS   P VP+ LP P           SP G P  RV F 
Sbjct: 9   PKSVPSGSS--SMKPPRPPRGPSFQAPAVPRPLPEP----------SSPGGRPRKRVRFA 56

Query: 162 VIRRSVNFCV 133
               S   CV
Sbjct: 57  SEASSHQICV 66


>11_06_0143 +
           20589574-20589684,20590256-20590873,20590943-20591010,
           20591159-20591234,20591311-20591372,20591452-20591603,
           20591889-20592052,20592129-20592317,20592417-20592538,
           20592620-20592827,20593238-20593291,20593457-20593626,
           20594265-20594355,20595405-20595529,20596372-20596444,
           20596822-20596914,20597482-20597728,20598305-20598364,
           20598461-20598590,20599008-20599014
          Length = 939

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 236 GGGKVFG-TLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDS-TNYGGRLD 409
           G G   G T+G +DDG   K   + +  +   G+  G A G R  G GG    N+G R D
Sbjct: 177 GAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNFGERKD 236

Query: 410 WANK 421
             +K
Sbjct: 237 PPHK 240


>08_02_0640 - 19636968-19638230
          Length = 420

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 503 DPTHRSLMLSSQICHRLVYLGQ*WLVHSCSPSLGVRRSWCCRL 375
           DPT  S++++           + +LV SC   L VRR  CCR+
Sbjct: 266 DPTWSSVLITDDDDTSTTDKKKLYLVESCGVLLMVRRKVCCRV 308


>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
          Length = 424

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -1

Query: 234 ICLSQVTSRGMSP*GLPADRVIFRVIRRSVNFCVNTHQSCSEXIKQ---ICIHFELYQVS 64
           +C+++  S    P  L    +IF VI    N  ++T  SCS  ++    I  H + Y  S
Sbjct: 334 VCITERRSLSTDPLNLSTFNIIFEVISAYGNIGLSTGYSCSRQLQHQEGIACHEKAYNFS 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,874,227
Number of Sequences: 37544
Number of extensions: 455084
Number of successful extensions: 2572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)