Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J12
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    25   1.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.5  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 299 YNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 400
           Y + ++  D+  +TG AYG   + PG  S  + G
Sbjct: 60  YKQRVY--DKNGMTGDAYGGLNIRPGQPSRQHAG 91


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 607 HQIMXDLCWKTDVWS 563
           +QI+   CW T +W+
Sbjct: 49  NQILTTNCWVTQIWT 63


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 149 DLLITRKITRSAGNPQGDIPRDVTWDK 229
           DL +  + T +    +GD+P  ++W K
Sbjct: 621 DLHLGERTTLTCSVTRGDLPLSISWLK 647


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,993
Number of Sequences: 438
Number of extensions: 4282
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)