Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_J09
(931 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.7
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 30 2.7
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 29 4.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 6.3
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 8.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.3
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.5 bits (73), Expect = 0.22
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +3
Query: 684 PPPXQK---GGXKTXXXFXKXGGXXPPPXSXPPKXPXTTPXFXPXPXPLXFPXXPAPR 848
PPP +K GG PPP S PP+ P TP P P P P PR
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPP-SPQRRPPRTPPSPEPR 181
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +3
Query: 738 GGXXPP-PXSXPPKXPXTTPXFXPXPXPLXFPXXPAP 845
GG PP P P + P P P P +P P P
Sbjct: 67 GGYPPPYPYQHPHQPPPAHPHHLQHPHPYAYPGYPVP 103
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/74 (28%), Positives = 23/74 (31%)
Frame = +3
Query: 621 PFXGGXXGPPXXNXNXXAXWTPPPXQKGGXKTXXXFXKXGGXXPPPXSXPPKXPXTTPXF 800
P G GP N A TP P G T G PP + PP +P
Sbjct: 186 PGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPAGPPGPDGASPTA 245
Query: 801 XPXPXPLXFPXXPA 842
P P PA
Sbjct: 246 APGAAGPPGPPGPA 259
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/74 (28%), Positives = 23/74 (31%)
Frame = +3
Query: 621 PFXGGXXGPPXXNXNXXAXWTPPPXQKGGXKTXXXFXKXGGXXPPPXSXPPKXPXTTPXF 800
P G GP N A TP P G T G PP + PP +P
Sbjct: 187 PGPPGPPGPAGPAGNDGAAGTPGPDGPAGESTYPEPAGPGPAGPPGPAGPPGPDGASPTA 246
Query: 801 XPXPXPLXFPXXPA 842
P P PA
Sbjct: 247 APGAAGPPGPPGPA 260
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 738 GGXXPPPXSXPPKXPXTTPXFXPXPXPLXFPXXPA 842
GG PPP PP+ P P P P P P P+
Sbjct: 345 GGMPPPP---PPRYPSAGPGMYPPPPPSRPPAPPS 376
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/66 (28%), Positives = 20/66 (30%)
Frame = +3
Query: 621 PFXGGXXGPPXXNXNXXAXWTPPPXQKGGXKTXXXFXKXGGXXPPPXSXPPKXPXTTPXF 800
P GG PP PPP + G PPP S PP P
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPR------YPSAGPGMYPPPPPSRPPAPPSGHGMI 381
Query: 801 XPXPXP 818
P P P
Sbjct: 382 PPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 738 GGXXPPPXSXPPKXPXTTPXFXPXPXPLXFPXXPA 842
GG PPP PP+ P P P P P P P+
Sbjct: 355 GGMPPPP---PPRYPSAGPGMYPPPPPSRPPAPPS 386
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/66 (28%), Positives = 20/66 (30%)
Frame = +3
Query: 621 PFXGGXXGPPXXNXNXXAXWTPPPXQKGGXKTXXXFXKXGGXXPPPXSXPPKXPXTTPXF 800
P GG PP PPP + G PPP S PP P
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPPPPPPR------YPSAGPGMYPPPPPSRPPAPPSGHGMI 391
Query: 801 XPXPXP 818
P P P
Sbjct: 392 PPPPPP 397
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/79 (31%), Positives = 25/79 (31%)
Frame = +3
Query: 609 PXXFPFXGGXXGPPXXNXNXXAXWTPPPXQKGGXKTXXXFXKXGGXXPPPXSXPPKXPXT 788
P P GG PP PPP G GG PPP PP P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPIS----GGPPPPP---PP--PGG 767
Query: 789 TPXFXPXPXPLXFPXXPAP 845
P P P P F P P
Sbjct: 768 CPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/79 (31%), Positives = 25/79 (31%)
Frame = +3
Query: 609 PXXFPFXGGXXGPPXXNXNXXAXWTPPPXQKGGXKTXXXFXKXGGXXPPPXSXPPKXPXT 788
P P GG PP PPP G GG PPP PP P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPIS----GGPPPPP---PP--PGG 767
Query: 789 TPXFXPXPXPLXFPXXPAP 845
P P P P F P P
Sbjct: 768 CPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/79 (31%), Positives = 25/79 (31%)
Frame = +3
Query: 609 PXXFPFXGGXXGPPXXNXNXXAXWTPPPXQKGGXKTXXXFXKXGGXXPPPXSXPPKXPXT 788
P P GG PP PPP G GG PPP PP P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPIS----GGPPPPP---PP--PGG 350
Query: 789 TPXFXPXPXPLXFPXXPAP 845
P P P P F P P
Sbjct: 351 CPPPPPPPPPGGFKGGPPP 369
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -1
Query: 865 APXXXXRGAGXXGKXRGXGXGXKXGVVXGXFGGXEXGGG 749
AP RG G G G G V G +GG GGG
Sbjct: 63 APNREKRGYAQYGGGGGYGGGHGGAAVGGGYGGAVGGGG 101
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -1
Query: 865 APXXXXRGAGXXGKXRGXGXGXKXGVVXGXFGGXEXGGGXXPP 737
+P GAG G G G G G G FGG G G P
Sbjct: 466 SPPKEFAGAGGFGSFGGGGGGGGFGGGGGGFGGGGGGFGSGSP 508
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 554 HXXXTPPPPHPHPXXXGGAXXXPLXGGXXGPP 649
H P PP P P GG+ GG GPP
Sbjct: 147 HRQYDPLPPPPPPPLMGGSGGHWRSGGERGPP 178
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 569 PPPPHPHPXXXGGAXXXPLXGGXXGP 646
PPPP P P G P GG GP
Sbjct: 577 PPPPPPPPMLGGPPPPPPPPGGLMGP 602
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +3
Query: 753 PPXSXPPKXPXTTPXFXPXPXPL-XFPXXPAP 845
PP PP P +P P P P P PAP
Sbjct: 85 PPAPLPPPPPPASPCCGPSPVPAPCCPPPPAP 116
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +3
Query: 684 PPPXQKGGXKTXXXFXKXGGXXPPPXSXPPKXPXTTPXFXPXPXPLXFPXXPA 842
PPP + + PPP PP P TP P P P P PA
Sbjct: 475 PPPSRIPNPSPSPQPAEVSKSPPPP---PPLPPIATPSSVPPPPPPPPPPPPA 524
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Frame = +2
Query: 452 PXPHPPKXFXXXXSPPXSXKXXXXLXXPXXTXGXHXXXTPPPP---HPHPXXXGGAXXXP 622
P P PPK SPP + + +PPPP P P GG+ P
Sbjct: 238 PPPPPPKG-----SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 623 LXGGXXGPPXXXQXP 667
G PP P
Sbjct: 293 RAGSPPPPPPPRGSP 307
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Frame = +2
Query: 452 PXPHPPKXFXXXXSPPXSXKXXXXLXXPXXTXGXHXXXTPPPP---HPHPXXXGGAXXXP 622
P P PPK SPP + + +PPPP P P GG+ P
Sbjct: 259 PPPPPPKG-----SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 623 LXGGXXGPPXXXQXP 667
G PP P
Sbjct: 314 RAGSPPPPPPPRGSP 328
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Frame = +2
Query: 452 PXPHPPKXFXXXXSPPXSXKXXXXLXXPXXTXGXHXXXTPPPP---HPHPXXXGGAXXXP 622
P P PPK SPP + + +PPPP P P GG+ P
Sbjct: 244 PPPPPPKG-----SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 623 LXGGXXGPPXXXQXP 667
G PP P
Sbjct: 299 RAGSPPPPPPPRGSP 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,636,772
Number of Sequences: 27780
Number of extensions: 188587
Number of successful extensions: 988
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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