Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J07
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.039
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +1

Query: 754 PPPPPFXXXGGXXPPPPPXXPXKXXXG 834
           PPPPP     G  PPPPP  P     G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = +1

Query: 754 PPPPPFXXXGGXXPPPPPXXPXKXXXGXPGXXSXP 858
           P PPP    GG  PPPPP  P     G P     P
Sbjct: 750 PVPPPAPIMGGPPPPPPP--PGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 754 PPPPPFXXXGGXXPPPPPXXPXKXXXGXPGXXSXP 858
           PPPPP        P P P  P     G P     P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 754 PPPPPFXXXGGXXPPPPPXXPXKXXXGXP 840
           PPPP F       PPPPP    K     P
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 754 PPPPPFXXXGGXXPPPPP 807
           PPPPP        PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 754 PPPPPFXXXGGXXPPPPP 807
           PPPPP        PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 785 GXXPPPPPXPXQKXXXXXXAXPPP 856
           G  PPPPP P  +        PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 754 PPPPPFXXXGGXXPPPPPXXP 816
           PPPPP         PPPP  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 782 GGXXPPPPPXPXQKXXXXXXAXPPP 856
           GG  PPPPP P           P P
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAP 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,894
Number of Sequences: 5004
Number of extensions: 17100
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)