Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J06
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   2.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.8  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   5.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   7.6  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -1

Query: 163 IIYNIHSGYSFNIIICFLKFY 101
           +IY ++S  S+++++CF+K Y
Sbjct: 241 VIYYMNSTKSYSVVVCFVKVY 261


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 124  IICFLKFYFFYLETRFSNGQAFGN 53
            + CFL+F +++L T FS   ++ N
Sbjct: 1118 VCCFLRFMYYFLPTVFSLSGSYWN 1141


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
            Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -1

Query: 196  MYFFFVNKCIFIIYNIHSGYSFNIIICFLKFYFFYLETRFSNGQAFGNKYK 44
            +Y   +N+ +F   + + G+ + ++   + FYFFY+E   S  ++  N  K
Sbjct: 955  IYIPVINRDVF--KHTYIGWEWGVVAVAVMFYFFYVEIWKSIRRSLTNPQK 1003


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 137 FF*YNNMFF-KILFLLFRNPFL*WTSIWEQVQNL-KDSTIV 21
           +F + N F  KI  L+F+ P +  T+ W   +NL KD  ++
Sbjct: 79  YFRHANTFVEKIKDLIFKTPVIPETNFWSACKNLEKDKKVI 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,655
Number of Sequences: 5004
Number of extensions: 56631
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)