Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J06
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    27   0.22 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   1.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   4.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.1  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 417 VKNNSGNSKKYSFKHSFFIYQNLHNENY 334
           + NN+  S  Y++ +++  Y N +N NY
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNNNYNTNY 109


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 684 VVDHGFSLVEL*VIYXYIYGHH 619
           VVD    LV+L V +  I+GHH
Sbjct: 300 VVDRQLELVQLGVGFMRIFGHH 321


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 181 VNKCIFIIYNIHSGYSFNIIIC 116
           +N CI+ +++    ++F  IIC
Sbjct: 57  INPCIYALFSKDFRFAFKSIIC 78


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 181 VNKCIFIIYNIHSGYSFNIIIC 116
           +N CI+ +++    ++F  IIC
Sbjct: 505 INPCIYALFSKDFRFAFKSIIC 526


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 647 LYIXIYMVIISAPSFAFVVNLA*KSF 570
           +YI +    +  PS  FV+NLA  +F
Sbjct: 74  VYIFLSTKSLRTPSNLFVINLAISNF 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,069
Number of Sequences: 438
Number of extensions: 4130
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)