Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_J01
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 690 PPXPXPXXPPPPXTXP 737
           PP P P  PPP  + P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 654 DTPLXYXPPPXPPPXPXP 707
           DTP    PPP PP    P
Sbjct: 336 DTPPKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
 Frame = -3

Query: 742 CXGCVXGGGGXXGWGXGG---GXGGGXYXXGVSXNXGGG 635
           C  C    GG      GG   G  GG    G +   GGG
Sbjct: 12  CCWCCDNLGGPGSSSAGGVVTGASGGSIVVGANNGGGGG 50



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 157 VHYLSC*LVLGHNQILCNR 101
           VH+ +   +LGH+  LC R
Sbjct: 281 VHHANHHAILGHSGFLCER 299


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
 Frame = +3

Query: 678 PPXPPPXPXPXXPP--PPXTXP 737
           PP P   P P  PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 240 LEETNKVFKKEKDSKKGIAFSTCVSVNN 323
           + E N + + +KD+K+ ++ ST   +NN
Sbjct: 423 MTEYNGLTEPKKDNKRKLSDSTMNKINN 450


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 275 RLQERHCIFNMRFCEQLHLSLFAHCERTG 361
           RLQE   + ++R  ++LHL   A  E  G
Sbjct: 226 RLQENSPLLDLRQLQELHLQRNAIVEIAG 254


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 724  GGGGXXGWGXGGGXGG 677
            GGG   G G  GG GG
Sbjct: 1706 GGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 724  GGGGXXGWGXGGGXGG 677
            GGG   G G  GG GG
Sbjct: 1702 GGGSLAGLGGLGGLGG 1717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,977
Number of Sequences: 438
Number of extensions: 4505
Number of successful extensions: 31
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)