Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I24
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527...    37   0.024
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    31   1.6  
06_01_0486 - 3455030-3455770                                           30   2.8  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  

>04_03_0747 -
           19251617-19251781,19252377-19252502,19252606-19252716,
           19252931-19253679,19254034-19254167,19254595-19254740,
           19255166-19255336,19255977-19256828
          Length = 817

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 558 PLKSEVXKPDRTIKXPXVSPWQXS-PXRXPVPTPAAYPDTWXAFXPSGTRGPFXLPP 725
           P+ +    P  T   P V  W    P R P PTP+A P    A  P+GT  P  +PP
Sbjct: 139 PMPTPTPTPTPTPTRPPVPVWAAPLPARTPTPTPSA-PPRAAAPSPAGTPSPSPIPP 194


>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 627 SPXRXPVPTPAAYPDTWXAFXPSGTRGPFXLPPRLXXFXPPV 752
           SP   P+P PA YP+    +   G      +PP      PPV
Sbjct: 153 SPVAPPLPPPARYPEARSRYDSHGWHPEADVPPPPPPLEPPV 194


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/74 (28%), Positives = 26/74 (35%)
 Frame = +3

Query: 543 HHKNRPLKSEVXKPDRTIKXPXVSPWQXSPXRXPVPTPAAYPDTWXAFXPSGTRGPFXLP 722
           HH   P      KP  + + P   P    P   P PTP   P       P     P+ +P
Sbjct: 53  HHGKPPEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPS------PPPYVPPY-IP 105

Query: 723 PRLXXFXPPVYRPP 764
           P    + PP   PP
Sbjct: 106 PPTPPYVPPYIPPP 119


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 284 NESAN---ARGEAVCVLGALPLPRSLTRCAR 367
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,848,349
Number of Sequences: 37544
Number of extensions: 334411
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)