Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I24
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   1.1  
Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    29   5.7  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
 Frame = +3

Query: 528 APLXEHHKNRPLKSEVXKPDRTIKXPXV--SPWQXSPXRXPVPTPAAYPD-TWXAFXPSG 698
           AP  +H    P       P   +  P    +P+       P P PA YP     A  P  
Sbjct: 70  APYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQ 129

Query: 699 TRGPFXLPPRLXXFXPPVYRPPXXHP 776
            + P   PP      PP Y PP   P
Sbjct: 130 QQPPPPPPPPHYPPPPPHYPPPPPAP 155



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 549 KNRPLKSEVXKPDRTIKXPXVSPWQXSPXRXPVPTPAAYP 668
           K  P   +  +P +T   P  +P+       P P PA YP
Sbjct: 34  KPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYP 73


>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/78 (25%), Positives = 27/78 (34%)
 Frame = +3

Query: 543 HHKNRPLKSEVXKPDRTIKXPXVSPWQXSPXRXPVPTPAAYPDTWXAFXPSGTRGPFXLP 722
           +H+N P+ SE+  PD     P   P   +P     P  A   +      P        +P
Sbjct: 311 YHRNYPMISEIRYPDLNTMRP--EPTAQTPPAPAAPPAAPALNRQSTIPPVAMTQRPMIP 368

Query: 723 PRLXXFXPPVYRPPXXHP 776
           P L    PP    P   P
Sbjct: 369 PSLPSSTPPAPLKPVAPP 386


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = +3

Query: 603 PXVSPWQXSPXRXPVPTPAAYPDTWXAFXPSGTRGPFXLPPRLXXFXPPVYRPP 764
           P V   Q  P   P P P    DTW    P    G F  PP      PP + PP
Sbjct: 87  PPVYHNQGPPRGYPPPPPQG-ADTWRGAPPPAHHGHFG-PPGHHFQGPPQHFPP 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,735
Number of Sequences: 27780
Number of extensions: 258660
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)