Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I23
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.54 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +3

Query: 390  PPPPPXGXPXXXXXXXXTXXPFSXXPPPXPPXKTXTPP 503
            PPPPP   P           P S  PPP P     + P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 737  PXAPPXKKXPPXPPXPXPPPPXXXXP 814
            P   P    PP    P PPPP    P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVP 1715



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +2

Query: 743  APPXKKX--PPXPPXPXPPPP 799
            APP      PP PP   PPPP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPP 1718


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 597 PPPXXGGGXGGFGXXGPPPPXP 532
           PPP    G  G G   PPPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
 Frame = +2

Query: 728 PXXPXAPPXKKXPPXPPXPX-----PPPPXXXXP 814
           P  P AP     PP PP P      PPPP    P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -3

Query: 582 GGGXGGF-GXXGPPPPXP 532
           GGG GGF G  G PPP P
Sbjct: 187 GGGFGGFGGGSGGPPPGP 204


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 728 PXXPXAPPXKKXPPXPPXPXPP 793
           P  P  PP  + P  PP P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 737 PXAPPXKKXPPXPPXPXPPP 796
           P  PP    PP  P P PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 764 PPXPPXPXPPPPXXXXP 814
           PP  P P PPPP    P
Sbjct: 5   PPGNPPPPPPPPGFEPP 21


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 728 PXXPXAPPXKKXPPXPPXPXPPPP 799
           P  P  PP    PP  P P P  P
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 728 PXXPXAPPXKKXPPXPPXPXPPPP 799
           P  P     K+  P P  P PPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,055
Number of Sequences: 5004
Number of extensions: 17865
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)