Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I22
         (1006 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   0.99 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 868 PPXPXXPPTPP 900
           PP P  PP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect(2) = 0.99
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 856 PPPPPPXPXXP 888
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 21.0 bits (42), Expect(2) = 0.99
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 853 RPPPPPPXP 879
           +P PPPP P
Sbjct: 340 KPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = +1

Query: 790 PPPXXXPXXSPPXPXX--PLXXXRPPPPPPXPXXPPT 894
           P P   P  SP  P    P    + PPP   P  PP+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +1

Query: 724 PPPXPXXAXPPPXXSLPXXRAPPPPXXXPXXSPP 825
           P P P  +   P    P   +  PP   P  +PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 12/45 (26%), Positives = 14/45 (31%)
 Frame = +3

Query: 609 PPXXFPXNQKNPPXPXXPXARGAPXXXPPPPXXGXXXXXPPXXXP 743
           P    P  Q +P        RG+P      P  G     PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +1

Query: 793 PPXXXPXXSPPXPXXPLXXXRPPPPPPXPXXPPTPP 900
           P    P   P     P    R  PP P    PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 853  RPPPPPPXP 879
            +PPPPPP P
Sbjct: 1354 QPPPPPPPP 1362


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 15/65 (23%), Positives = 20/65 (30%)
 Frame = +1

Query: 679 PXFXPPPXXXGXXXXPPPXPXXAXPPPXXSLPXXRAPPPPXXXPXXSPPXPXXPLXXXRP 858
           P + P P          P        P   +P  R P P       + P    P+   +P
Sbjct: 103 PVYIPQPRPPHPRLRREPEAEPGNNRPVY-IPQPRPPHPRLRREPEAEPGNNRPVYIPQP 161

Query: 859 PPPPP 873
            PP P
Sbjct: 162 RPPHP 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,396
Number of Sequences: 438
Number of extensions: 10998
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33379164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)