Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I20
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.13 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.52 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 804 PPPPXPPPPPXXPPPXPP 857
           PP P   PPP  PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = +3

Query: 795 PXXPPPPXPPPPPXXPPP-XPPG 860
           P  P    PP P   PPP  PPG
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 771 PPLPXXXPPXXPPPPXPP 824
           PP P   PP   PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 792 PPXXPPPPXPPPPPXXPPPXPP 857
           PP     P P  PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 804 PPPPXPPPPP 833
           PP P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 810 PPXPPPPPXXPPPXPPGP 863
           PP P PP   PPP   GP
Sbjct: 338 PPKPAPP--PPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 795 PXXPPPPXPPPPPXXP 842
           P  P PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 804 PPPPXPPPPPXXPPP 848
           P P  PPPPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 792 PPXXPPPPXPP 824
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 804  PPPPXPPP 827
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 807  PPPXPPPP 830
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 810  PPXPPPPP 833
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 856 GGXGGGXXGGGGGXGGGGXXG 794
           G  GG    G    GGGG  G
Sbjct: 33  GASGGSIVVGANNGGGGGGLG 53


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 105 LIMFLSRFLSTILLVLPHFGLLRC 176
           L ++   FLSTIL + P F  L C
Sbjct: 26  LKIWTEEFLSTILRLDPKFIALHC 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,199
Number of Sequences: 438
Number of extensions: 7978
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)