Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I19
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   4.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   7.8  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 191 VMLKASTRAKTKDRIFAKFIVSLCKFKARTLRHKRRCTDHLMCTI 57
           V +K     + KDR+   F       KA++ +HKR   DH + TI
Sbjct: 464 VRVKVVQEKRNKDRLIVTFRFWYYLMKAKSFQHKR---DHRLLTI 505


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/48 (31%), Positives = 32/48 (66%)
 Frame = +1

Query: 97  LNVRALNLHKLTMNFAKILSFVFALVLALSMTSAAPEPRWKIFKKIEK 240
           ++V+A ++ K+T    +I+ F+FALV+++++   A    W+  KK+E+
Sbjct: 561 VSVKAPSMQKVTN---RIVIFIFALVVSMAIYCTAAYFVWQ--KKVER 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,008
Number of Sequences: 5004
Number of extensions: 38751
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)