Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I17
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    40   0.002
11_06_0144 - 20608382-20610277                                         31   1.2  
03_01_0560 + 4162206-4162607                                           30   2.1  
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    29   6.5  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
 Frame = +2

Query: 524 PRLEYVSVVDPSIIITALLGTNLVFVCFSAAAMLAERXSWXXXXXXXXXXXXXXS-LMTL 700
           P ++     D SI++TA +GT + F CF+ AA++A+R  +                L   
Sbjct: 107 PLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRREYLYLGGLLSSGLSILLWLQFA 166

Query: 701 VNLVMQSHFLYXAHLYXGPHAHVPVLYYSDXQLIIENPKMGXQXFGXXALELSIDFI 871
            ++   S   +   +Y G    +  + Y D Q IIE    G   +   AL L  DF+
Sbjct: 167 ASIFGHSTGSFMFEVYFGLLIFLGYMVY-DTQEIIERAHHGDMDYIKHALTLFTDFV 222



 Score = 37.9 bits (84), Expect = 0.011
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +1

Query: 277 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 456
           ++ P V+ HLK VY TL +   +++ G Y+ +      G L+ +   G +  L + P   
Sbjct: 28  QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFE 86

Query: 457 KNTNLRLGYLLGFGLTSGMSMG 522
           +    R G LL   L  G S+G
Sbjct: 87  ERK--RFGILLAAALLEGASVG 106


>11_06_0144 - 20608382-20610277
          Length = 631

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 651 RNS-QLXRSASIAAAEKHTNTRLVPSRAVIMIDGSTTLTYSSRGTHAH 511
           RNS Q   +AS+AAA   + T + PS   +    S + T S+ G+ AH
Sbjct: 35  RNSIQRVVTASVAAASTSSTTLVFPSSGSVTSSSSASFTSSAPGSEAH 82


>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 373 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 522
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 235 NTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM-FTRFQAGFLSAI 408
           N ++    + + +N+     +Q +K + A+L  TC S S   Y D+   R+    +SAI
Sbjct: 422 NNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAI 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,210,491
Number of Sequences: 37544
Number of extensions: 423636
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)