Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I14
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   109   5e-25
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   105   6e-24
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   7.8  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  109 bits (262), Expect = 5e-25
 Identities = 75/170 (44%), Positives = 91/170 (53%)
 Frame = +1

Query: 313 LLVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 492
           L+++G+ I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSK 126

Query: 493 DAPMFVVGVXLXAYDPLF*GHLKCFLHHKLSCPHLPKVIXDNXXIVXGXXXXXXXXXXXX 672
           DAPMFVVGV L  ++P                P L KVI D   I  G            
Sbjct: 127 DAPMFVVGVNLEKFNPSEKVISNASCTTNCLAP-LAKVINDTFGIEEGLMTTVHATTATQ 185

Query: 673 EXLSXDLLEKYWP*XPVGAQQNIXPCPLXGGXXSXGVTVIPWLLNGKXXG 822
           + +     +K W     GA  NI P    G   + G  VIP  LNGK  G
Sbjct: 186 KTVDGP-SKKDWR-GGRGASANIIPSS-TGAAKAVG-KVIP-ALNGKLTG 230



 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 46/63 (73%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 305
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 306 GFL 314
           G L
Sbjct: 65  GKL 67


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  105 bits (253), Expect = 6e-24
 Identities = 73/170 (42%), Positives = 90/170 (52%)
 Frame = +1

Query: 313 LLVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 492
           L+++GN I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSK 126

Query: 493 DAPMFVVGVXLXAYDPLF*GHLKCFLHHKLSCPHLPKVIXDNXXIVXGXXXXXXXXXXXX 672
           DAPM+VVGV    ++P                P L KVI D   I  G            
Sbjct: 127 DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAP-LAKVINDTFGIEEGLMTTVHATTATQ 185

Query: 673 EXLSXDLLEKYWP*XPVGAQQNIXPCPLXGGXXSXGVTVIPWLLNGKXXG 822
           + +     +K W     GA  NI P    G   + G  VIP  LNGK  G
Sbjct: 186 KTVDGP-SKKDWR-GGRGASANIIPSS-TGAAKAVG-KVIP-ALNGKLTG 230



 Score =  101 bits (241), Expect = 2e-22
 Identities = 47/63 (74%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
 Frame = +3

Query: 129 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 305
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 306 GFL 314
           G L
Sbjct: 65  GKL 67


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 550 GHLKCFLHHKLSCPHLPK 603
           GHL  F HH++S   LPK
Sbjct: 251 GHLVDFFHHEVSVGRLPK 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,798
Number of Sequences: 5004
Number of extensions: 61512
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)