Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_I10
(968 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 33 1.2
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 33 1.2
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 33 1.2
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 33 1.2
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 33 1.2
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 33 1.2
BC044643-1|AAH44643.1| 780|Homo sapiens TSC22 domain family, me... 33 1.6
AB014569-1|BAA31644.2| 825|Homo sapiens KIAA0669 protein protein. 33 1.6
DQ067453-1|AAZ23040.1| 1262|Homo sapiens diaphanous-1 protein. 27 4.5
BC094832-1|AAH94832.1| 321|Homo sapiens atonal homolog 8 (Droso... 31 4.8
BC021207-1|AAH21207.1| 321|Homo sapiens atonal homolog 8 (Droso... 31 4.8
AK074681-1|BAC11135.1| 321|Homo sapiens protein ( Homo sapiens ... 31 4.8
AK027614-1|BAB55233.1| 321|Homo sapiens protein ( Homo sapiens ... 31 4.8
AF529205-1|AAO85773.1| 321|Homo sapiens basic helix-loop-helix ... 31 4.8
BC117257-1|AAI17258.1| 1262|Homo sapiens diaphanous homolog 1 (D... 27 5.8
BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein. 31 6.3
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 33.5 bits (73), Expect = 1.2
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +2
Query: 791 PQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXN 964
P P PPPP G P PP P L PP P G PAP N
Sbjct: 305 PPPGPPPPQQGPPPPPGPFPPRPP----GPLGPPLTLAPPPHLPGPPPGAPPPAPHVN 358
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 33.5 bits (73), Expect = 1.2
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +2
Query: 791 PQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXN 964
P P PPPP G P PP P L PP P G PAP N
Sbjct: 305 PPPGPPPPQQGPPPPPGPFPPRPP----GPLGPPLTLAPPPHLPGPPPGAPPPAPHVN 358
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 33.5 bits (73), Expect = 1.2
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +2
Query: 791 PQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXN 964
P P PPPP G P PP P L PP P G PAP N
Sbjct: 232 PPPGPPPPQQGPPPPPGPFPPRPP----GPLGPPLTLAPPPHLPGPPPGAPPPAPHVN 285
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 33.5 bits (73), Expect = 1.2
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +2
Query: 791 PQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXN 964
P P PPPP G P PP P L PP P G PAP N
Sbjct: 342 PPPGPPPPQQGPPPPPGPFPPRPP----GPLGPPLTLAPPPHLPGPPPGAPPPAPHVN 395
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 33.5 bits (73), Expect = 1.2
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +2
Query: 791 PQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXN 964
P P PPPP G P PP P L PP P G PAP N
Sbjct: 305 PPPGPPPPQQGPPPPPGPFPPRPP----GPLGPPLTLAPPPHLPGPPPGAPPPAPHVN 358
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 33.5 bits (73), Expect = 1.2
Identities = 21/58 (36%), Positives = 22/58 (37%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P P PPPP S SP PP+ S A P L PP P P PP
Sbjct: 295 PPPASIPPPPPLPSGLGS--LSPAPPMPPVS-AGPPLPPPPPPPPPLPPPSSAGPPPP 349
Score = 33.1 bits (72), Expect = 1.6
Identities = 20/61 (32%), Positives = 22/61 (36%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXN 964
P P P PPPP + P PP + P PP P GL P PP
Sbjct: 327 PLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPP---PPGLAPPPPPG 383
Query: 965 L 967
L
Sbjct: 384 L 384
>BC044643-1|AAH44643.1| 780|Homo sapiens TSC22 domain family,
member 2 protein.
Length = 780
Score = 33.1 bits (72), Expect = 1.6
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +2
Query: 776 FXLPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAP 955
F + PQP PPPP G S +PLPP + + P P + G P
Sbjct: 269 FSVGQPQP-PPPPVGGAVAQSS--APLPPFPGAATGPQPMMAAAQPSQPQGAGPGGQTLP 325
Query: 956 PXNL 967
P N+
Sbjct: 326 PTNV 329
>AB014569-1|BAA31644.2| 825|Homo sapiens KIAA0669 protein protein.
Length = 825
Score = 33.1 bits (72), Expect = 1.6
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +2
Query: 776 FXLPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAP 955
F + PQP PPPP G S +PLPP + + P P + G P
Sbjct: 314 FSVGQPQP-PPPPVGGAVAQSS--APLPPFPGAATGPQPMMAAAQPSQPQGAGPGGQTLP 370
Query: 956 PXNL 967
P N+
Sbjct: 371 PTNV 374
>DQ067453-1|AAZ23040.1| 1262|Homo sapiens diaphanous-1 protein.
Length = 1262
Score = 27.5 bits (58), Expect(2) = 4.5
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = +2
Query: 797 PXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P PPP G S P P PP P G+ P PP
Sbjct: 642 PPPPPLPEGVGIPSPSSLPGSTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPP 695
Score = 22.6 bits (46), Expect(2) = 4.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 785 PXPQPXPPPP 814
P P P PPPP
Sbjct: 599 PPPPPPPPPP 608
>BC094832-1|AAH94832.1| 321|Homo sapiens atonal homolog 8
(Drosophila) protein.
Length = 321
Score = 31.5 bits (68), Expect = 4.8
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 782 LPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
LP P P PPP P P + C PP P S PAPP
Sbjct: 121 LPTPPPPPPPAPQSQAPGGPEAQPF----REPGLRPRILLCAPPARPAPSAPPAPPAPP 175
>BC021207-1|AAH21207.1| 321|Homo sapiens atonal homolog 8
(Drosophila) protein.
Length = 321
Score = 31.5 bits (68), Expect = 4.8
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 782 LPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
LP P P PPP P P + C PP P S PAPP
Sbjct: 121 LPTPPPPPPPAPQSQAPGGPEAQPF----REPGPRPRILLCAPPARPAPSAPPAPPAPP 175
>AK074681-1|BAC11135.1| 321|Homo sapiens protein ( Homo sapiens
cDNA FLJ90200 fis, clone MAMMA1001615, weakly similar to
NEUROGENIC DIFFERENTIATION FACTOR 1. ).
Length = 321
Score = 31.5 bits (68), Expect = 4.8
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 782 LPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
LP P P PPP P P + C PP P S PAPP
Sbjct: 121 LPTPPPPPPPAPQSQAPGGPEAQPF----REPGPRPRILLCAPPARPAPSAPPAPPAPP 175
>AK027614-1|BAB55233.1| 321|Homo sapiens protein ( Homo sapiens
cDNA FLJ14708 fis, clone NT2RP3000603, weakly similar to
NEUROGENIC DIFFERENTIATION FACTOR 1. ).
Length = 321
Score = 31.5 bits (68), Expect = 4.8
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 782 LPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
LP P P PPP P P + C PP P S PAPP
Sbjct: 121 LPTPPPPPPPAPQSQAPGGPEAQPF----REPGPRPRILLCAPPARPAPSAPPAPPAPP 175
>AF529205-1|AAO85773.1| 321|Homo sapiens basic helix-loop-helix
transcription factor protein.
Length = 321
Score = 31.5 bits (68), Expect = 4.8
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 782 LPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
LP P P PPP P P + C PP P S PAPP
Sbjct: 121 LPTPPPPPPPAPQSQAPGGPEAQPF----REPGPRPRILLCAPPARPAPSAPPAPPAPP 175
>BC117257-1|AAI17258.1| 1262|Homo sapiens diaphanous homolog 1
(Drosophila) protein.
Length = 1262
Score = 27.1 bits (57), Expect(2) = 5.8
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = +2
Query: 797 PXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P PPP G S P P PP P G+ P PP
Sbjct: 642 PPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPP 695
Score = 22.6 bits (46), Expect(2) = 5.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 785 PXPQPXPPPP 814
P P P PPPP
Sbjct: 599 PPPPPPPPPP 608
>BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein.
Length = 673
Score = 31.1 bits (67), Expect = 6.3
Identities = 18/66 (27%), Positives = 21/66 (31%)
Frame = +2
Query: 761 GXGXVFXLPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGG 940
G G P P P PP G + + LPP P + PP P
Sbjct: 37 GPGAGLLAPGPPPPPPVGSMGALTAAFPFAALPPPPPPPPPPPPQQPPPPPPPPSPGASY 96
Query: 941 LXPAPP 958
P PP
Sbjct: 97 PPPQPP 102
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,608,651
Number of Sequences: 237096
Number of extensions: 2317631
Number of successful extensions: 7667
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6801
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12880737904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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