Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_I10
(968 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 37 0.019
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 36 0.033
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.13
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.13
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.13
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.40
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.40
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.40
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.2
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 30 2.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.6
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 6.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 6.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 6.6
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 37.1 bits (82), Expect = 0.019
Identities = 20/61 (32%), Positives = 23/61 (37%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXN 964
P P P PPPP + P PP S A + PP P S + P PP
Sbjct: 1336 PSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPPP 1395
Query: 965 L 967
L
Sbjct: 1396 L 1396
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 36.3 bits (80), Expect = 0.033
Identities = 19/59 (32%), Positives = 22/59 (37%)
Frame = +2
Query: 791 PQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXNL 967
P P PPPP G S P PP+ + PP + GG P PP L
Sbjct: 501 PNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPPLPL 559
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPP--GXPFXSKGGLXPAPP 958
P P PPPP G + SP PP S P PP G P G P PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPP--GXPFXSKGGLXPAPP 958
P P PPPP G + SP PP S P PP G P G P PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPP--GXPFXSKGGLXPAPP 958
P P PPPP G + SP PP S P PP G P G P PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = +2
Query: 797 PXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXNL 967
P PPPP G S P PP P PP P KGG P PP +
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP------PPPPPGGFKGGPPPPPPPGM 792
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +2
Query: 797 PXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P PPPP G + P PP P + PP P GG P PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPP--PPGGCPPPPP 773
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P P P PP G LPP+ P PP P GG PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = +2
Query: 797 PXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXNL 967
P PPPP G S P PP P PP P KGG P PP +
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP------PPPPPGGFKGGPPPPPPPGM 792
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +2
Query: 797 PXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P PPPP G + P PP P + PP P GG P PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPP--PPGGCPPPPP 773
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P P P PP G LPP+ P PP P GG PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = +2
Query: 797 PXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPPXNL 967
P PPPP G S P PP P PP P KGG P PP +
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP------PPPPPGGFKGGPPPPPPPGM 375
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +2
Query: 797 PXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P PPPP G + P PP P + PP P GG P PP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPP----PGGLPPISGGPPPPPP--PPGGCPPPPP 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P P P PP G LPP+ P PP P GG PP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 791 PQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXP-FXSKGGLXPAPP 958
P P PPPP P PP P + PP P GG+ P PP
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMP-PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 791 PQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXP-FXSKGGLXPAPP 958
P P PPPP P PP P + PP P GG+ P PP
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMP-PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPAPP 958
P PPPP G + P+PP PP P GG P PP
Sbjct: 537 PVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 866 GGGEXGKXGPXXGNXLXXGGGGRVEVKAGKK 774
GGG G G G GGGR ++ AG++
Sbjct: 139 GGGRGGNGGGNNGGGRGGNGGGRPQISAGER 169
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKG---GLXPAP 955
P P P PPPP P PP+ P C PP P S PAP
Sbjct: 40 PPPLPCPPPPIC-----PPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAP 94
Query: 956 PXN 964
N
Sbjct: 95 VFN 97
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Frame = +2
Query: 776 FXLPXPQPX---PPPPXXGXFXX-----SXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXS 931
F +P P P PPPP G + P PP+ P + PP P S
Sbjct: 63 FFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP-PS 121
Query: 932 KGGLXPAPP 958
G+ P PP
Sbjct: 122 GLGVAPQPP 130
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +2
Query: 782 LPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPA 952
+P P P PPP G S P PP PP P G PA
Sbjct: 608 VPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGPA 664
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +2
Query: 782 LPXPQPXPPPPXXGXFXXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXPA 952
+P P P PPP G S P PP PP P G PA
Sbjct: 434 VPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGPA 490
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Frame = +2
Query: 785 PXPQPXPPPPXXGXF-----XXSXXXSPLPPLXXXSXAXPXLRXCXPPGXPFXSKGGLXP 949
P P P PPPP + P PP A P PP P+ P
Sbjct: 24 PQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVP---APAPPPAPYPQHAVPAP 80
Query: 950 APP 958
APP
Sbjct: 81 APP 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,047
Number of Sequences: 27780
Number of extensions: 311020
Number of successful extensions: 1099
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -