Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I09
         (1118 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    46   1e-05
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    46   1e-05
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    31   0.39 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    28   2.1  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   4.7  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.7  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   4.7  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   6.3  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    26   8.3  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = +3

Query: 552 TEKARARILAAGGEILTFDQLALRAP 629
           T+ ARARIL AGGE+LT DQLALRAP
Sbjct: 108 TKSARARILKAGGEVLTLDQLALRAP 133


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = +3

Query: 552 TEKARARILAAGGEILTFDQLALRAP 629
           T+ ARARIL AGGE+LT DQLALRAP
Sbjct: 108 TKSARARILKAGGEVLTLDQLALRAP 133


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = -1

Query: 590 SSSSQNACTSFFGXHEEQPTRHSSVFLVPVLNRSILXTWFPPTNPPAKSKTPSTEVWAFL 411
           S+ S     S+F   E  PT H+S+  + +   S+    F P  PP+  KT       FL
Sbjct: 427 STPSNTQTDSYFIQRENTPTNHNSIPTIQLEKSSMDFLRFDP--PPSAVKTSHNYGLPFL 484

Query: 410 FNCWAAAPKTEN 375
            N    A  T N
Sbjct: 485 SNQRCPATPTRN 496


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 659 GSAKMLVRQCVHFGPCLQEAPRXH 730
           G   +  RQCV   PCL+  P+ H
Sbjct: 198 GELSIFARQCVLLSPCLRMLPKEH 221


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 43  FKEFWLFFPFLGFG-QEWGYLNNSNXLNTEQGKSFGRQPESLNSSKELF*LXKG 201
           +K FW F P +G      GY+  SN LN     S+G    S ++  ++F L  G
Sbjct: 378 YKIFW-FVPTIGSAIMGGGYIMTSNPLNMYVVDSYGIYSASASAGVKIFQLLLG 430


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 43  FKEFWLFFPFLGFG-QEWGYLNNSNXLNTEQGKSFGRQPESLNSSKELF*LXKG 201
           +K FW F P +G      GY+  SN LN     S+G    S ++  ++F L  G
Sbjct: 378 YKIFW-FVPTIGSAIMGGGYIMTSNPLNMYVVDSYGIYSASASAGVKIFQLLLG 430


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 577 KMRARAFSVNMKSSPPVILRYSWYQFSTVQFXEPGSPQLTHRPNPKPLQRRFGL 416
           ++RAR   +  K SP ++  +  +    V   EP +P +   PN  P    F L
Sbjct: 296 EVRARVAEI-FKDSPDLLEEFKLFLPDNVDSTEPSTPNVQKSPNRLPPVGNFSL 348


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 43  FKEFWLFFPFLGFG-QEWGYLNNSNXLNTEQGKSFGRQPESLNSSKELF*LXKG 201
           +K FW F P +G      GY+  SN LN     S+G    S ++  ++F L  G
Sbjct: 378 YKIFW-FVPTIGSAIMGGGYIMTSNPLNMYVVDSYGIYSASASAGVKIFQLLFG 430


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 193 KVKIIPLKNLNFPVAARNFSPVRCLIXLNCSNNPILDQTQ 74
           K  ++ +  LN P    NF  + C + + C  N ++D  +
Sbjct: 306 KPYMLAVGKLN-PAKLANFQEIECFVLIACGENSLIDSKE 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,929,929
Number of Sequences: 5004
Number of extensions: 76531
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 593670236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)