Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I08
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...   107   2e-24
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    27   2.6  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    27   3.4  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   6.0  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score =  107 bits (258), Expect = 2e-24
 Identities = 47/115 (40%), Positives = 74/115 (64%)
 Frame = +2

Query: 236 SRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIXFKTNLEHEYIQNF 415
           SR ++LAW+N        +IE+   G A  Q  D ++   +P+K++ F+ N E++YI N+
Sbjct: 4   SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNW 62

Query: 416 KILQAGFKKMGVDKIVPIDKLVKGRFQDNXEFLQWFKKFFDANYGGAAYDAVAQR 580
           K+LQ  F K G+DK+V  ++L + + QDN EF+QW K+F+D  Y G  YDA+A+R
Sbjct: 63  KVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPGGDYDALARR 117


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 54  SKKNEVSVLDKNSNKFDNLSHTAKLFR 134
           + +NE + + K SN  DNL+ +++LFR
Sbjct: 263 NSQNEHTEVQKKSNSIDNLTPSSELFR 289


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 359 PMKRIXFKTNLEHEYIQNFKILQAGFK 439
           P KR+  KT L+HE+     + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/37 (24%), Positives = 25/37 (67%)
 Frame = +1

Query: 220 YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 330
           Y++  ++  ++S+ +  SP+ + E+++ ++R  +LPV
Sbjct: 58  YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,042
Number of Sequences: 5004
Number of extensions: 59165
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)