Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I08
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...   116   3e-26
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191...   116   3e-26
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    31   1.6  
06_03_0274 + 19073634-19073743,19073818-19074013,19074473-19074715     29   4.8  
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392...    28   8.4  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    28   8.4  

>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score =  116 bits (278), Expect = 3e-26
 Identities = 52/119 (43%), Positives = 78/119 (65%), Gaps = 2/119 (1%)
 Frame = +2

Query: 233 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIXFKTNLEHEYIQN 412
           + R+++LAW+N  LQ   +K+EE  +GA  CQ MD   PG+VPM ++ F    E+E IQN
Sbjct: 15  VGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVNFDAKTEYEMIQN 74

Query: 413 FKILQAGFKKMGVDKIVPIDKLVKGRFQDNXEFLQWFKKFFDANYGG--AAYDAVAQRE 583
           +K+LQ  F K+ + K + ++KL KGR  DN EF+QW K++ D+  GG   +Y+A  +RE
Sbjct: 75  YKVLQDVFNKLKITKHIEVNKLTKGRPLDNLEFMQWMKRYCDSVNGGFMNSYNASERRE 133


>04_04_1332 +
           32718584-32718706,32718892-32718960,32719069-32719155,
           32719865-32719971,32720066-32720187,32720462-32720535,
           32720833-32720946,32721100-32721213
          Length = 269

 Score =  116 bits (278), Expect = 3e-26
 Identities = 51/107 (47%), Positives = 73/107 (68%)
 Frame = +2

Query: 233 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIXFKTNLEHEYIQN 412
           + R ++L+W+N  LQ + AK+EE  +GA  CQ MDM+ PG VPM ++ F    E++ IQN
Sbjct: 19  VGRGEILSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDAKTEYDMIQN 78

Query: 413 FKILQAGFKKMGVDKIVPIDKLVKGRFQDNXEFLQWFKKFFDANYGG 553
           +KILQ  F K+ + K + ++KLVKGR  DN EFLQW K++ D+  GG
Sbjct: 79  YKILQDVFNKLRLSKNIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGG 125


>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 350 QGTACP*TGNRRHLYTTLRSSQSLTGDNHSPTLAYHAAIDF 228
           QGT+C      RH  T LR++   TG +   +L  H A+D+
Sbjct: 733 QGTSCRGVNWDRHSLTDLRAAVVCTGGHRLASLLRHLALDY 773


>06_03_0274 + 19073634-19073743,19073818-19074013,19074473-19074715
          Length = 182

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 621 LGAAEPXCPMGRPSRCATASYAAPP 547
           +GAAE  CP+ R +  A A++  PP
Sbjct: 85  IGAAESGCPLRRRTTAAAAAFFTPP 109


>11_06_0657 +
           25938382-25938443,25938511-25938718,25939222-25939268,
           25939473-25939805,25940529-25940613,25940689-25940884,
           25941012-25941182,25941261-25941318,25941429-25941657,
           25942296-25943183
          Length = 758

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 533 FDANYGGAAYDAVAQREGLPMGHXGSAAPRGRCR*XTRXPC 655
           F   Y G AY+AV Q  GLP  +      RG     +  PC
Sbjct: 426 FTETYWGDAYNAVKQTGGLPRVNEAHNMSRGGISPASETPC 466


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 278 SNFAKIEEL-CTGAAY---CQFMDMLFPGSVPMKRIXFKTNLEHEYIQNFKILQAGF 436
           SN  KI E+ C G      C+F+  L    +P+++I  K   EH   + F  +  GF
Sbjct: 377 SNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKINIKLTSEHCRSECFNFVCTGF 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,597,573
Number of Sequences: 37544
Number of extensions: 369272
Number of successful extensions: 802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)