Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I01
         (856 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   4.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.1  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   4.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   7.1  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 801 NPXXPXXPXPSPLXSP 848
           +P  P  P P+PL SP
Sbjct: 83  DPEIPVAPEPAPLASP 98


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 230 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 325
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 230 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 325
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 230 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 325
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 230 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 325
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 230 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 325
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 191 DVEKILSSVGIEADGEKLKKVITELNGKDVEQL 289
           DVE++LS   + A GE+   + +    ++V+QL
Sbjct: 329 DVEEMLSHQSMPATGERQTLMFSATFPEEVQQL 361


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 196 NVSGSWRGLATQHSQ*IARPRN 131
           ++ G+W G A  HS    RP +
Sbjct: 215 DLRGNWAGFADSHSPLYKRPHD 236


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 336 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPS 229
           P P    + F R   IS   + P  S  +  S SPS
Sbjct: 172 PSPASDSECFDRRKFISALVNAPSVSPASLPSISPS 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,738
Number of Sequences: 336
Number of extensions: 2142
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)