Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_I01
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    87   2e-18
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    85   1e-17
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    83   5e-17
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.4  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   7.8  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 36/63 (57%), Positives = 54/63 (85%)
 Frame = +2

Query: 146 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 325
           YLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG EKL+++P
Sbjct: 7   YLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVP 66

Query: 326 VGG 334
            GG
Sbjct: 67  TGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 36/63 (57%), Positives = 54/63 (85%)
 Frame = +2

Query: 146 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 325
           YLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG EKLS++P
Sbjct: 7   YLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVP 66

Query: 326 VGG 334
             G
Sbjct: 67  SAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 34/63 (53%), Positives = 54/63 (85%)
 Frame = +2

Query: 146 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 325
           YLL  +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG EKL+++P
Sbjct: 7   YLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVP 66

Query: 326 VGG 334
            GG
Sbjct: 67  SGG 69


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 264 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTAS 151
           SSV T LS S S+SIP  +     STS ++  V+P S++S
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSS 47


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -2

Query: 336 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 169
           PPP     SFS    I+ ++ +P SS  T  + SP    S+ +P+ + I S S ++  VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 168 PPS 160
           P S
Sbjct: 246 PTS 248


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 462 TKLYKSTRRXSLFQFMF 512
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 294 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 151
           ++S S+ L  S++ T  S   +AS+PT   I S S        P+T+S
Sbjct: 79  SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,830
Number of Sequences: 5004
Number of extensions: 33757
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)