Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H23
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218...    31   1.6  
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755     29   4.8  

>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
            30922078-30922161,30922258-30922344,30922431-30922501,
            30922648-30922702,30923374-30923509,30925009-30925103,
            30925203-30925357,30925435-30925543,30925761-30925817,
            30925913-30926027,30926177-30926264,30926738-30927501,
            30927600-30927688,30928315-30928422,30928550-30928657,
            30928887-30928977,30929235-30929287,30929557-30929712,
            30930763-30930825,30931491-30931535,30932075-30932130,
            30933051-30933132,30933238-30933354,30933428-30933530,
            30933912-30934062,30934180-30934417,30934564-30934764,
            30934850-30934935,30935036-30935135
          Length = 1347

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 192  RWSYHFEKVIAKCV*KL*RSLPPRYQMM*RKTLKKSRQN-SKSSVKVQEQRK 344
            +WS  F   IAKC+ K  R  P   +M+  K ++K     SK   K++E +K
Sbjct: 988  KWSLLFHDFIAKCLTKDPRLRPAASEMLKHKFIEKCNPGASKMLAKIKEAKK 1039


>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
          Length = 482

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 333 LEPLQNFLNSASIFLGSFFTSSDSVAANFSTVFTHTSQSPSRSD 202
           L  L+NFL  AS   G+  +  D V    STV      SP  SD
Sbjct: 289 LNSLENFLREASEEFGNDISYDDGVPGPSSTVVLTELHSPGESD 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,550,572
Number of Sequences: 37544
Number of extensions: 304189
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)