Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H21
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.061
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.43 
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    28   1.7  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   3.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.3  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.3  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = +3

Query: 621 PPPPPXXXXXPXXXXXXXXXXXXXXPPPXXXXKKXPPPPPPXXXXXXPXPP 773
           PPPPP     P              PP        PPPPPP      P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP----PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
 Frame = +3

Query: 612 KXXPPPPPXXXXX-------PXXXXXXXXXXXXXXPPPXXXXKKXPPPPPP 743
           K  PPPPP            P              PPP       PPPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/60 (30%), Positives = 18/60 (30%)
 Frame = +3

Query: 564 PPXXXXPPXKTPXXXXKXXPPPPPXXXXXPXXXXXXXXXXXXXXPPPXXXXKKXPPPPPP 743
           PP        TP       PPP P     P              PPP       PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP-----------PPPGVAGAGPPPPPPP 781



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 720 KXPPPPPPXXXXXXPXP 770
           K PPPPPP      P P
Sbjct: 730 KSPPPPPPAVIVPTPAP 746



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +3

Query: 621 PPPPPXXXXXPXXXXXXXXXXXXXXPPPXXXXKKXPPPPPP 743
           P P P     P              PP        PPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 22/82 (26%), Positives = 22/82 (26%)
 Frame = -1

Query: 738 GGGGXFFXPPXGGGXXXXXXXXXXXXXXXGXXXXXGGGGXXFXXXXRGFXGGXXXXGGXX 559
           G GG    PP G G               G     GGG   F     GF GG    GG  
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251

Query: 558 PXXFXGXXXXKXXXGGVXXGXW 493
                G        GG     W
Sbjct: 252 GGFGGGPGGFGGGPGGHGGPGW 273


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 255 SLSKELRHFHTSHAVNKIVA-FKLSDIGEGIREVVIKEWFVKVGDN 389
           SLS + R+FH S A+N + + F++  +   + E  I +W  K GD+
Sbjct: 18  SLSVKQRYFHCS-ALNGVASMFRMPALSPTMEEGNITKWHFKEGDS 62


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 189 IKVTTQSARNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKLSDI 332
           ++ T Q ARN   L YK  LN      ++      AVN I A+ L+ +
Sbjct: 255 LQQTFQEARNTDPLVYKWVLNFFCKSVVKQAEAEVAVNPISAYPLAKV 302


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/87 (21%), Positives = 21/87 (24%)
 Frame = +3

Query: 513 PPXXXXXXXTL*XXXGXPPXXXXPPXKTPXXXXKXXPPPPPXXXXXPXXXXXXXXXXXXX 692
           PP       T+      PP    P    P       PP PP                   
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 693 XPPPXXXXKKXPPPPPPXXXXXXPXPP 773
            PPP    +  PP          P PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/57 (28%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
 Frame = +3

Query: 612 KXXPPPPPXXXXX---PXXXXXXXXXXXXXXPPPXXXXKKXPPPPPPXXXXXXPXPP 773
           K  PPPPP        P              PPP         P PP      P PP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/56 (26%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
 Frame = +3

Query: 582 PPXKTPXXXXKXXPPPPPXXXXXPXXXXXXXXXXXXXXPPPXXXXK--KXPPPPPP 743
           PP   P        P PP     P              PPP    +    PP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 565 PPXXXXPPXKPPXXXXKXXPPPP 633
           PP    PP  PP       PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 696 PPPXXXXKKXPPPPPP 743
           PPP       PPPPPP
Sbjct: 14  PPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 564 PPXXXXPPXKTPXXXXKXXPPPPP 635
           PP    PP   P       PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 3.8
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 564 PPXXXXPPXKTPXXXXKXXPPPPP 635
           PP    P    P       PPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPP 196



 Score = 21.0 bits (42), Expect(2) = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 726 PPPPPP 743
           PPPPPP
Sbjct: 192 PPPPPP 197


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 564 PPXXXXPPXKTPXXXXKXXPPPPP 635
           P     PP   P    K  PPPPP
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPP 748


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 157 NTDLRTRIDIAMKELRTR 104
           NTDLR+R+DI+  +L+ R
Sbjct: 408 NTDLRSRVDISESKLKKR 425


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 22/98 (22%), Positives = 25/98 (25%), Gaps = 5/98 (5%)
 Frame = +1

Query: 460  VSXPXXSLXLXPPPXXDTP-PXXFXXXXPXKXXGGXPPXXXXPPXKPPXXXXKXXPPPPX 636
            V  P  ++   P P    P P       P     G PP        PP       PP P 
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163

Query: 637  XXXXXPXXXXXXXXXXXXXXP----PPXXXXKKXPPPP 738
                 P              P    PP     + PP P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 352 TSRIPSPISESLKATILLTA*LVWKCLNSLLKLSF 248
           T R+PS I E   +TI+ +   + K L +L  LSF
Sbjct: 323 TKRVPSRIMEGFSSTIIASFSSLLKKLLTLFVLSF 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,355
Number of Sequences: 5004
Number of extensions: 45541
Number of successful extensions: 205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)