Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H21
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.8  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 180 CRKIKVTTQSARNGSQLSYKTPLNESLSKELRH 278
           C+K  +++ S R+ S+   +T    S  ++LRH
Sbjct: 207 CKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRH 239


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 717 KKXPPPPPP 743
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 717  KKXPPPPPP 743
            ++ PPPPPP
Sbjct: 1352 QQQPPPPPP 1360



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 717  KKXPPPPPP 743
            ++ PPPPPP
Sbjct: 1353 QQPPPPPPP 1361


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 388 MFXXSTHLRSTKRQAAVTILXDTK 459
           +F    H+R T  + A T+  DTK
Sbjct: 171 IFQLKQHMRDTMNKIAETLDEDTK 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,165
Number of Sequences: 438
Number of extensions: 5705
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)