Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_H19
(1025 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.46
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.46
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.61
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.80
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.9
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.46
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 906 VPRGAPXHTNPPPXXXPPLPXXXPPPP 986
+P G P PPP PP PPPP
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 933 NPPPXXXPPLPXXXPPPPXXWXPPXPXPPG 1022
NPPP PP P PP PP P PPG
Sbjct: 8 NPPPP--PPPPGFEPPSQ----PPPPPPPG 31
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 939 PPXXXPPLPXXXPPPPXXWXPPXPXPP 1019
PP PP PPPP + PP PP
Sbjct: 5 PPGNPPP-----PPPPPGFEPPSQPPP 26
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.46
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 906 VPRGAPXHTNPPPXXXPPLPXXXPPPPXXWXPPXPXPPGA 1025
+P +P P P PP+P PPP P PP A
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQP-AAPVKSPPSA 187
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = +3
Query: 909 PRGAPXHTN-PP--PXXXPPLPXXXPPPPXXWXPP 1004
P AP + PP P PP+P PP P PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +3
Query: 921 PXHTNPPPXXXPPLPXXXPPPPXXWXP-PXPXPPGA 1025
P P P PP P PP P P P PP A
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPA 175
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +3
Query: 909 PRGAPXHTNPPPXXXPPLPXXXPPPPXXWXP 1001
P +P P PP+P PPPP P
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Frame = +3
Query: 939 PPXXXPPLPXXXPPPPXXWXP-PXPXPP 1019
PP PP P PP P P P PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPP 166
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.61
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 906 VPRGAPXHTNPPPXXXPPLPXXXPPPPXXWXPPXPXP 1016
VP AP PPP PP PPP PP P P
Sbjct: 751 VPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPP 783
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 909 PRGAPXHTNPPPXXXPPLPXXXPPPPXXWXPPXPXPPG 1022
P P P P+P P P PP P PPG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 909 PRGAPXHTNPP-PXXXPPLPXXXPPPPXXWXPPXPXPP 1019
P AP PP P P P PP PP P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Frame = +3
Query: 906 VPRGAPXHTN-PPPXXXPPLPXXXPPPPXX---WXPPXPXPPGA 1025
VP AP PPP P PPPP PP P PP A
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.80
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = +3
Query: 909 PRGAPXHTNPPPXXXP-PLPXXXPP--PPXXWXPPXPXPPGA 1025
P GAP P P P+P PP P PP P P GA
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Frame = +3
Query: 909 PRGAPXHTNP---PPXXXPPLPXXXPPPPXXWXPPXPXPPGA 1025
P GAP P PP P + P P PP P P GA
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA 1120
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Frame = +3
Query: 936 PPPXXXPPLPXXX----PPPPXXWXPPXPXP 1016
PPP PP+P P PP PP P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 657 PXXXXPSGXPXXPPSTPPXLP 719
P PS P PPS PP LP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLP 440
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +3
Query: 909 PRGAPXHTNPPPXXXPP-LPXXXPPPPXXWXPPXPXPPGA 1025
P G T+ PP PP LP PP PP P GA
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP-SLPMGA 443
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 934 TPPXPXXPLSPXXXPPPXXXGXPXXPXP 1017
TPP P + P PP G P P P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 930 TNPPPXXXPPLPXXXPPPPXXWXPPXPXPP 1019
T PPP P P PP P P P PP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAG-PPSAPPPP 1734
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 921 PXHTNPPPXXXPPLPXXXPPPPXXWXPPXP 1010
P + PPP PP+P P P PP P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAP---PPPLP 1736
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 1021 PGGXGXGGXQXXGGGGXXXGRGG 953
PG G G G GG GRGG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGG 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,573
Number of Sequences: 5004
Number of extensions: 15718
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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