Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H19
         (1025 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.051
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.051
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +3

Query: 915  GAPXHTNPPPXXXPPLPXXXPPPPXXWXPPXPXPPGA 1025
            GAP    P P   P  P    PP     PP   PPGA
Sbjct: 19   GAPG-PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA 54


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 437 WGGYPFFXQSXGF 475
           WGGY F  +S GF
Sbjct: 637 WGGYKFDKRSFGF 649


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 437 WGGYPFFXQSXGF 475
           WGGY F  +S GF
Sbjct: 637 WGGYKFDKRSFGF 649


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 954  PPLPXXXPPPPXXWXP 1001
            PP P   PPPP    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,301
Number of Sequences: 438
Number of extensions: 3380
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34225737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)