Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H18
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.8  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -3

Query: 941 GGGXGRGGXXGGXSXXXXXXXXXXXXXGRXKRVXGXRGGXGVXXXAGGGXXGXGGGGLG 765
           G   GRGG  GG                   R  G RGG G      GG  G  GG  G
Sbjct: 13  GSRGGRGGFNGGRGGFGGGRGGARGGGRGGAR--GGRGGRGGARGGRGGSSGGRGGAKG 69



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
 Frame = -3

Query: 941 GGGXGRGGXXGGXSXXXXXXXXXXXXXG--RXKRVXGXRGGXGVXXXAGGGXXGXGGG 774
           G   GRGG  GG               G  R     G RGG G    A GG  G  GG
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +2

Query: 701  PXXXLSATPGALSXXXXXXXXXLTPXPPXXTTHPPRXPXPHXPPFXPXPAXSSP 862
            P    SA P  +S           P PP     PP    P   P  P PA S+P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSA---PPMPAGPPSAPPPPLPASSAP 1741



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 770  TPXPPXXTTHPPRXPXPHXPPFXPXPAXSSPP 865
            TP PP  +  PP    P  PP    P  + PP
Sbjct: 1706 TPPPPPMSVPPP----PSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 773 PXPPXXTTHPPRXPXPHXPPFXPXPAXSSP 862
           P P      PP  P    PP  P PA ++P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 27/126 (21%), Positives = 34/126 (26%), Gaps = 3/126 (2%)
 Frame = +2

Query: 497  PQGPPLXAXXPY-APXP*PXHPKXPXSXXRCPTPTG--PLXXPSXXPLXTXXXXXXXXXX 667
            P   P  A  P  AP   P  PK   +    P P+G  P+  PS                
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162

Query: 668  XXXXXXXXXVRPXXXLSATPGALSXXXXXXXXXLTPXPPXXTTHPPRXPXPHXPPFXPXP 847
                       P   +   P   +           P  P  +   P  P P   P  P P
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222

Query: 848  AXSSPP 865
            +   PP
Sbjct: 1223 SAGLPP 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,094
Number of Sequences: 5004
Number of extensions: 28882
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)