Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H16
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    32   0.48 
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.0  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.9  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    28   7.9  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.9  

>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 418 FLYVLDYIMQFLDYISNYYKNTTVIXFIRVIQYTCAEIYF 537
           F+Y++ YI+  + Y     K    + F  VI +TCA I F
Sbjct: 651 FIYIIYYILMKMIYREKIPKRAIALLFAAVISWTCAGILF 690


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +1

Query: 634 PPXPXXXXPPPXXXXXSXGXXGSPPLRGGVNXGPXTLKTXPXXXFXPHPPP 786
           PP P     PP     + G    PP+ GG+   P      P     P PPP
Sbjct: 75  PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP-----PPPPP 120


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/64 (29%), Positives = 21/64 (32%)
 Frame = +1

Query: 634 PPXPXXXXPPPXXXXXSXGXXGSPPLRGGVNXGPXTLKTXPXXXFXPHPPPXXPXXNGLX 813
           PP P      P       G  G+P   G     P   KT P     P  PP  P  +G  
Sbjct: 111 PPGPGGSPGKPGKPG-KPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPDGPA 169

Query: 814 GKXG 825
           G  G
Sbjct: 170 GPAG 173


>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 688 GXXGSPPLRGGVNXGPXTLKTXPXXXFXPHPPPXXPXXNGLXGKXG 825
           G  G P L GG+     ++         P  PP  P  +GL G+ G
Sbjct: 197 GLNGQPGLPGGMGPPGQSMSNVLPGPLGPPGPPGQPGNHGLAGQPG 242


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 630 PPXPPXXXXPPPXXXXXXPGXXGIPP 707
           PP  P    PPP      PG  G+PP
Sbjct: 310 PPGMPGMPPPPPPSRFGPPGMGGMPP 335


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 630 PPXPPXXXXPPPXXXXXXPGXXGIPP 707
           PP  P    PPP      PG  G+PP
Sbjct: 320 PPGMPGMPPPPPPSRFGPPGMGGMPP 345


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +3

Query: 606 YIFPPXXXPPXPPXXXXPPPXXXXXXPGXXGIPPFKGR 719
           Y +P    PP PP    PPP      P   G     G+
Sbjct: 811 YPYPGGPVPPGPPQNRMPPPPPAQGAPSPSGAAGSNGK 848


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/57 (31%), Positives = 19/57 (33%)
 Frame = +1

Query: 616 PXXPXXPPXPXXXXPPPXXXXXSXGXXGSPPLRGGVNXGPXTLKTXPXXXFXPHPPP 786
           P  P  PP      PPP          G PP+ GG    P      P     P PPP
Sbjct: 714 PPPPGLPPITGGPPPPPPPG-------GLPPITGGPPPPPPPGGLPPISGGPPPPPP 763


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/57 (31%), Positives = 19/57 (33%)
 Frame = +1

Query: 616 PXXPXXPPXPXXXXPPPXXXXXSXGXXGSPPLRGGVNXGPXTLKTXPXXXFXPHPPP 786
           P  P  PP      PPP          G PP+ GG    P      P     P PPP
Sbjct: 714 PPPPGLPPITGGPPPPPPPG-------GLPPITGGPPPPPPPGGLPPISGGPPPPPP 763


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +1

Query: 82  NFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQ 258
           +F++ G  I    N    YF +R R+  G++RG+R S +  +   E  + G +++   N+
Sbjct: 624 HFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKNE 682

Query: 259 SGSSYSRHRASKIIRKVDFI 318
             +  +  +A K  +  + +
Sbjct: 683 EEARKAAEKAEKAQKMTEML 702


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +1

Query: 82  NFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQ 258
           +F++ G  I    N    YF +R R+  G++RG+R S +  +   E  + G +++   N+
Sbjct: 622 HFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKNE 680

Query: 259 SGSSYSRHRASKIIRKVDFI 318
             +  +  +A K  +  + +
Sbjct: 681 EEARKAAEKAEKAQKMTEML 700


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/57 (31%), Positives = 19/57 (33%)
 Frame = +1

Query: 616 PXXPXXPPXPXXXXPPPXXXXXSXGXXGSPPLRGGVNXGPXTLKTXPXXXFXPHPPP 786
           P  P  PP      PPP          G PP+ GG    P      P     P PPP
Sbjct: 297 PPPPGLPPITGGPPPPPPPG-------GLPPITGGPPPPPPPGGLPPISGGPPPPPP 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,761,960
Number of Sequences: 27780
Number of extensions: 276578
Number of successful extensions: 1040
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)