Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H14
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...   116   2e-26
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...   116   3e-26
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...   115   6e-26
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420           31   1.6  

>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score =  116 bits (280), Expect = 2e-26
 Identities = 49/91 (53%), Positives = 65/91 (71%)
 Frame = +2

Query: 74  EGYSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 253
           +G  SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA         
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 62

Query: 254 XMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 346
            MR+++ V RRF++ F+EG    P+K  A++
Sbjct: 63  RMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score =  116 bits (278), Expect = 3e-26
 Identities = 49/89 (55%), Positives = 63/89 (70%)
 Frame = +2

Query: 74  EGYSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 253
           +G  SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA         
Sbjct: 24  KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 83

Query: 254 XMRHLKIVRRRFRNGFKEGKPTPPKKAVA 340
            MR+++ V RRF++ F+EG    P+K  A
Sbjct: 84  RMRYMRHVPRRFKSNFREGTEATPRKRAA 112


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score =  115 bits (276), Expect = 6e-26
 Identities = 49/91 (53%), Positives = 65/91 (71%)
 Frame = +2

Query: 74  EGYSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 253
           +G  SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA         
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 62

Query: 254 XMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 346
            MR+L+ V +RF++ F+EG    P+K  A++
Sbjct: 63  RMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93


>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
          Length = 1407

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 24  REFLKICFRIVKSDKMTKGTQASVSAEIRPIRYAEDVVDR 143
           RE+L   F  +  + +T  +QAS +AE+ P R+A D+V R
Sbjct: 683 REYLSELFHSISGNAITVFSQASAAAEMTPTRWA-DLVKR 721


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,712
Number of Sequences: 37544
Number of extensions: 282092
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)