Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_H13
(845 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 4.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.8
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 5.8
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar... 26 5.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.8
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 381 SPQLVEPGNASASALAEYCAPNFANGY 301
SP L EP S + +C FA GY
Sbjct: 33 SPSLAEPFTLPISEIRRFCWSRFARGY 59
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 391 YESPVNGLVFCCDFRSFTDVVTEMPKDLLEVLPGIAGMLTNKXPMN 528
YE VNGL R + +E + + LP I T+ P+N
Sbjct: 179 YERTVNGLFIDDTTRERIERKSEASRQTISALPSIISSYTSLAPLN 224
>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 394 ESPVNGLVFCCDFRSFTDVVTEMPKDLLEVL 486
ESP N + CD R+ + KD L V+
Sbjct: 146 ESPTNPRISICDIRAIVKITRSKAKDALLVM 176
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 232 IWTVVHVKEHKTATAIVVLNDPYVA 306
I T++H+ EHK ++ LN Y++
Sbjct: 1273 IGTILHILEHKNREQVLYLNVKYIS 1297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,532
Number of Sequences: 5004
Number of extensions: 42064
Number of successful extensions: 149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -