Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_H12
(949 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 32 0.58
01_01_0070 - 542603-542686,542803-543441 31 1.0
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 29 4.1
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 29 5.4
11_06_0610 - 25449085-25453284 29 7.1
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 29 7.1
06_01_0486 - 3455030-3455770 29 7.1
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 29 7.1
07_01_0424 + 3231025-3231115,3231241-3231342,3233308-3233465,323... 28 9.4
04_04_0675 + 27183826-27184443 28 9.4
04_04_0290 - 24174361-24174744,24175057-24175209,24175323-241755... 28 9.4
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 32.3 bits (70), Expect = 0.58
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 200 LGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSN 379
LG MG MA++L+K GF+V YD K L G +S I+ +N
Sbjct: 331 LGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDS-PEEVSKDVEILVIMVAN 389
Query: 380 KVXLDXYL-GKDGVVAHAKKXSLLIXPSXIDP 472
+V + L G G V+ + +I S + P
Sbjct: 390 EVQAENVLYGNAGAVSVMAAGTSIILSSTVSP 421
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 31.5 bits (68), Expect = 1.0
Identities = 24/78 (30%), Positives = 26/78 (33%)
Frame = +3
Query: 699 P*P*PXNPVXMAPHPEWLQLTALXLGPLQXDSXPTLLLARAQKXSPPSXPXXXPVPXXXV 878
P P P P P P TA P+ P + A A PP P P P V
Sbjct: 38 PTPVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPP--PV 95
Query: 879 VPPPX*XQXXXHPXXSTP 932
PPP P S P
Sbjct: 96 TPPPVTPPPVTPPPVSPP 113
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 221 MAANLVKKGFTVRGYDPSKDALN 289
+A L+K+G RGYD SKD+ N
Sbjct: 251 VARRLLKQGLPFRGYDESKDSYN 273
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 719 PCSHGPSPXMATAXCPXPWAITXGL 793
PCS GPSP PWA T G+
Sbjct: 129 PCSLGPSPARPNPGKTGPWAWTDGI 153
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 832 PLPPAXPXXLSPPXXXSPPP 891
PLPP P PP SPPP
Sbjct: 1135 PLPPPVPVSSPPPPEKSPPP 1154
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -3
Query: 434 FSHEPQRHLCPGTXRAXLYCWSIWKRPRRLHQRLQQWSWL 315
F E + G A L WS W R R +H R Q W WL
Sbjct: 68 FMQEEGGKVFTGRMCATLPWWSTW-RGRWIHLRDQPWLWL 106
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 832 PLPPAXPXXLSPPXXXSPPP 891
P PP+ P + PP SPPP
Sbjct: 127 PTPPSPPPYVPPPTPPSPPP 146
>03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = -1
Query: 364 GNDHVDSINGCSNGVGWRHSVLGRCVQCIFGRIVAANCETLFNQVRSHESSHVSEGRGKP 185
G++HV+ + N V W L Q A + E + Q ++ E HV + +P
Sbjct: 864 GSEHVNGLPSTENEVEWSEKTLNEEHQPCSSAAEADSPEFMLKQ-KAEEEEHVEQDGVQP 922
Query: 184 HSC 176
C
Sbjct: 923 EQC 925
>07_01_0424 +
3231025-3231115,3231241-3231342,3233308-3233465,
3233608-3233715
Length = 152
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 505 RXXAGIXTCPVSGGVMGAHNATLPLHGP 588
R + +CP SG + AH TLP + P
Sbjct: 89 RELCDVTSCPASGDFLVAHQQTLPSYTP 116
>04_04_0675 + 27183826-27184443
Length = 205
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 832 PLPPAXPXXLSPPXXXSPPPNK 897
P PPA P L PP SPPP K
Sbjct: 109 PPPPASPPPL-PPAPSSPPPKK 129
>04_04_0290 -
24174361-24174744,24175057-24175209,24175323-24175581,
24175659-24176167
Length = 434
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 42 PVALRPRTRPHAKLRKKQIQNGRAHNIKHSVFVHSRQTG 158
PVA P+T+ L KK I G IK F H+ + G
Sbjct: 390 PVARYPQTKIERDLVKKAINEGITSPIKSIQFFHTSEAG 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,081,986
Number of Sequences: 37544
Number of extensions: 526749
Number of successful extensions: 1808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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