Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H11
         (1035 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    30   0.46 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.6  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   7.6  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   7.6  

>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
 Frame = +1

Query: 280 PPPPPXXXPPGXXWGXFXGGXXGXXXXFXF---PPLTAPXXXXXPPPPXFSXXFFSPGXX 450
           PPPP     PG  +G F G   G    F F    P  A       P   F   F      
Sbjct: 76  PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFSASDPNDIFERVFGHAFAG 135

Query: 451 GGGXXXG 471
           GGG   G
Sbjct: 136 GGGMGGG 142


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 271 GGXPPPPPXXXPPGXXW 321
           GG PPPPP   P    W
Sbjct: 303 GGLPPPPPPPPPSNDFW 319


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 826 PPXXFXPRXXPPPPP 870
           PP  F P   PPPPP
Sbjct: 14  PPPGFEPPSQPPPPP 28


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 504 GGGGGXXXXKKTPXXPPPXGPRGKKXXRKXGGGGXRXXXGGCEGG 370
           GG GG     +        G RG +   + G GG     GG +GG
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = -1

Query: 495 GGXXXXKKTPXXPPPXGPRGKKXXRKXGGGGXRXXXGGCEGGEXKGXXAPXXSP 334
           GG     +    PPP GP  K+  R+  GG      G           A   SP
Sbjct: 75  GGGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSPSPHEARSRSP 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,690
Number of Sequences: 5004
Number of extensions: 19024
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)