Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H10
         (983 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   7e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.062
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   2.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = +3

Query: 822 PPXPPPRGXXPGXFXXPPXFPPWGEXXGPPXPXNPPPGXXSXXXGXXPXXPP 977
           PP PPP    P     P   PP     G P P  PPPG         P  PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.062
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
 Frame = +3

Query: 822 PPXPPPRGXXPGXFXXPPXF----PPWGEXXGPPXPXNPPPGXXSXXXGXXPXXPP 977
           PP PPPR    G    PP      PP      P     PPP   S      P  PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 26/101 (25%), Positives = 27/101 (26%), Gaps = 2/101 (1%)
 Frame = +1

Query: 679 PPGPXPPXKKXSPKXS-PXXSXGGXXPPXGXFGXSXXXXXXXXXXXXXXXXXPPPGAXXP 855
           PP P PP    +     P        PP      S                 P P    P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 856 GXSXPRLXSPXGGXXGGXLPP-KTPPRGGFPXAXXXPPXPP 975
           G S P L  P G       PP  TPP          PP  P
Sbjct: 397 GRSAPAL-PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
 Frame = +3

Query: 747 AXPPXXPFWXXPGVSXXXXXXXXXXPPXPPPRGXXP-GXFXXPPXFP---PWGEXXGPPX 914
           A PP  P    P +           PP P P    P      PP  P   P G    PP 
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449

Query: 915 PXNPP 929
           P + P
Sbjct: 450 PPSAP 454


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 20/77 (25%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
 Frame = +3

Query: 753 PPXXPFWXXPGVSXXXXXXXXXXPPXPPPRGXXPGXFXXPPXFPPWGEXXGPPXPXNPP- 929
           PP  P    PG            P  PP     PG     P +P      G P    PP 
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPG 559

Query: 930 -PGXXSXXXGXXPXXPP 977
            PG  +         PP
Sbjct: 560 APGSYNTSESSNLNAPP 576


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +3

Query: 822 PPXPPPRGXXPGXFXXPPXFPPWGEXXGPPXPXNPPPGXXSXXXGXXPXXP 974
           PP P      P      P  PP      PP P   PP   S      P  P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 904 GXLPPKTPPRGGFPXAXXXPPXPP 975
           G  PP  PP G  P +   PP PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,075
Number of Sequences: 5004
Number of extensions: 26368
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)