Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H06
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   263   1e-70
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   263   1e-70
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   263   1e-70
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   263   1e-70
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   250   8e-67
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   250   8e-67
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    62   7e-10
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    62   7e-10
AF003146-5|AAB54199.1|  299|Caenorhabditis elegans Hypothetical ...    30   2.0  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  263 bits (644), Expect = 1e-70
 Identities = 112/175 (64%), Positives = 140/175 (80%)
 Frame = +2

Query: 80  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 259
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 260 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 439
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K 
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125

Query: 440 QKXAFTKASKKWQDELGRXSLXKDFXXMIRYCTVVRVXAHXXMKLXKQRQXXAHI 604
           +K AFTK +KKWQDE G+  +  DF  + +YC+ +RV AH  MK+ ++RQ  AH+
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  263 bits (644), Expect = 1e-70
 Identities = 112/175 (64%), Positives = 140/175 (80%)
 Frame = +2

Query: 80  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 259
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 260 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 439
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K 
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125

Query: 440 QKXAFTKASKKWQDELGRXSLXKDFXXMIRYCTVVRVXAHXXMKLXKQRQXXAHI 604
           +K AFTK +KKWQDE G+  +  DF  + +YC+ +RV AH  MK+ ++RQ  AH+
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  263 bits (644), Expect = 1e-70
 Identities = 112/175 (64%), Positives = 140/175 (80%)
 Frame = +2

Query: 80  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 259
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 260 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 439
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K 
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125

Query: 440 QKXAFTKASKKWQDELGRXSLXKDFXXMIRYCTVVRVXAHXXMKLXKQRQXXAHI 604
           +K AFTK +KKWQDE G+  +  DF  + +YC+ +RV AH  MK+ ++RQ  AH+
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  263 bits (644), Expect = 1e-70
 Identities = 112/175 (64%), Positives = 140/175 (80%)
 Frame = +2

Query: 80  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 259
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 260 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 439
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K 
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125

Query: 440 QKXAFTKASKKWQDELGRXSLXKDFXXMIRYCTVVRVXAHXXMKLXKQRQXXAHI 604
           +K AFTK +KKWQDE G+  +  DF  + +YC+ +RV AH  MK+ ++RQ  AH+
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  250 bits (613), Expect = 8e-67
 Identities = 107/163 (65%), Positives = 131/163 (80%)
 Frame = +2

Query: 80  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 259
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 260 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 439
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K 
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125

Query: 440 QKXAFTKASKKWQDELGRXSLXKDFXXMIRYCTVVRVXAHXXM 568
           +K AFTK +KKWQDE G+  +  DF  + +YC+ +RV AH  M
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  250 bits (613), Expect = 8e-67
 Identities = 107/163 (65%), Positives = 131/163 (80%)
 Frame = +2

Query: 80  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 259
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 260 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 439
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY NW K 
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125

Query: 440 QKXAFTKASKKWQDELGRXSLXKDFXXMIRYCTVVRVXAHXXM 568
           +K AFTK +KKWQDE G+  +  DF  + +YC+ +RV AH  M
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 26/58 (44%), Positives = 39/58 (67%)
 Frame = +2

Query: 431 YKCQKXAFTKASKKWQDELGRXSLXKDFXXMIRYCTVVRVXAHXXMKLXKQRQXXAHI 604
           Y+ +  AFTK +KKWQDE G+  +  DF  + +YC+ +RV AH  MK+ ++RQ  AH+
Sbjct: 25  YRGRIKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 82



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 80  FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 166
           F  P HG MGF PKKRSR +RG++KAF K
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 26/58 (44%), Positives = 39/58 (67%)
 Frame = +2

Query: 431 YKCQKXAFTKASKKWQDELGRXSLXKDFXXMIRYCTVVRVXAHXXMKLXKQRQXXAHI 604
           Y+ +  AFTK +KKWQDE G+  +  DF  + +YC+ +RV AH  MK+ ++RQ  AH+
Sbjct: 25  YRGRIKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 82



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 80  FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 166
           F  P HG MGF PKKRSR +RG++KAF K
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>AF003146-5|AAB54199.1|  299|Caenorhabditis elegans Hypothetical
           protein F56F4.2 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 305 TPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 433
           T P     + GY++   G+R    VW E  S+   +   KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,068
Number of Sequences: 27780
Number of extensions: 325937
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)