Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H05
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    71   1e-12
AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    66   2e-11
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    62   7e-10
AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical ...    40   0.003
U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical pr...    36   0.049
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      32   0.46 
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    29   5.6  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   5.6  
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    29   5.6  
Z83237-2|CAB05789.1|  258|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    28   7.4  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    28   7.4  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    28   7.4  
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
 Frame = +3

Query: 225 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPTIN-GLSPDAPDAYSSC 389
           CL CIC   SGCK  + C  +    +CG ++I  GY+ D G+PT   G + +A  A+  C
Sbjct: 20  CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA--AWKRC 76

Query: 390 TVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 566
             D  CA   V+NY  R+   CNG G+  C      H  G  GC       Y N    C
Sbjct: 77  ADDLNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNGVKSC 135


>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = +3

Query: 225 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPTI-NGLSPDAPDAYSSCT 392
           CL CIC   SGCK     +     +CG ++I   Y+ D G+PT  +G + +A  A+  C 
Sbjct: 20  CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCA 77

Query: 393 VDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 566
            D  CA   V+NY  R+   C G G   C      H  G  GC       Y N    C
Sbjct: 78  NDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNGIKSC 135


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
 Frame = +3

Query: 225 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP-TINGLSPDAPDAYSSC 389
           CL CIC   SGCK  + C  +    +CG ++I   Y+ D G+P   +G S +   A+  C
Sbjct: 20  CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRC 76

Query: 390 TVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 566
             D  CA   V+NY  R+  +C G G   C      H  G  GC       Y    + C
Sbjct: 77  ADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHASGTLGYWKGVHSC 135


>AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical
           protein C45G7.1 protein.
          Length = 145

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +3

Query: 273 QCEGETC-GLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQ 449
           QC    C G F I   Y+ D G+P           A+  C  D  CA   + NY  R+  
Sbjct: 20  QCMHCMCLGNFVIKLPYYIDCGEPG-KQRGESTESAWKRCADDLDCAETCMMNYYHRYKS 78

Query: 450 DCNGDGVVNC 479
            CNG G+  C
Sbjct: 79  QCNGLGMSEC 88



 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 405 CAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 566
           C A + QNY  R+   C+G G+  C  +   H  G  GC       Y     +C
Sbjct: 88  CEA-SFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140


>U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical
           protein C55F2.2 protein.
          Length = 159

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
 Frame = +3

Query: 225 CLGCICQAISGCKQGLQCEGET-----CGLFRITWGYWADAGKPTINGLSPDAPDAYSSC 389
           CL  +C   SGC   L C  +      CG FR+    +    +P       +  +A+ +C
Sbjct: 31  CLLAMCDQDSGCVP-LGCSVDQFDRIGCGYFRLNIYQFQQCYQPGKKDEDTEN-EAWMNC 88

Query: 390 TVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGC 521
             D  C+A  ++    +F   C G     C     IH  G  GC
Sbjct: 89  AQDYQCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGC 130


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 26/83 (31%), Positives = 36/83 (43%)
 Frame = +1

Query: 340 PLSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATG 519
           PL+  + +   +PT     + T P  PSKTT      T   T   TA TT  ST    T 
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQ 422

Query: 520 APANFLLTM*TCLTSASMSSRST 588
            P     T     T+AS ++++T
Sbjct: 423 KPTTVTSTTTLPSTTASTTTKTT 445


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 24/72 (33%), Positives = 31/72 (43%)
 Frame = +1

Query: 373 MPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 552
           +PT     + T P  PSKTT      T   T   TA TT  ST    T  P     T   
Sbjct: 495 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 552

Query: 553 CLTSASMSSRST 588
             T+AS ++++T
Sbjct: 553 PSTTASTTTKTT 564


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 24/72 (33%), Positives = 31/72 (43%)
 Frame = +1

Query: 373 MPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 552
           +PT     + T P  PSKTT      T   T   TA TT  ST    T  P     T   
Sbjct: 336 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 393

Query: 553 CLTSASMSSRST 588
             T+AS ++++T
Sbjct: 394 PSTTASTTTKTT 405


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 153 FVRCCWLPESVSPMFRN---SPLXTEVCLGCICQAISGCKQGLQCEGETCGLFRITWGYW 323
           F + C  P+  S + +    +P   EV  G  C A + C +G  CE    GL R   GY 
Sbjct: 808 FRKLCECPQDKSEISQGQCVTPRKLEVVPGASCNANTVCTKGSTCES---GLCRCQPGYI 864

Query: 324 ADAG 335
           A +G
Sbjct: 865 AVSG 868


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 153  FVRCCWLPESVSPMFRN---SPLXTEVCLGCICQAISGCKQGLQCEGETCGLFRITWGYW 323
            F + C  P+  S + +    +P   EV  G  C A + C +G  CE    GL R   GY 
Sbjct: 905  FRKLCECPQDKSEISQGQCVTPRKLEVVPGASCNANTVCTKGSTCES---GLCRCQPGYI 961

Query: 324  ADAG 335
            A +G
Sbjct: 962  AVSG 965


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 551 VYIVKRKFAG---APVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDGLRGAVRVYSAAR 381
           VY + R F     A V S +V++  + A+ HS+ V     ++  +  GLRG    Y+ A 
Sbjct: 208 VYALARVFIPNYTAQVISDIVNKRGIQALIHSIIVLTCLTATSSLFGGLRGGCFDYATAL 267

Query: 380 VGIR 369
           V +R
Sbjct: 268 VTLR 271


>Z83237-2|CAB05789.1|  258|Caenorhabditis elegans Hypothetical
           protein R06B9.2 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 397 TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANF 534
           T+T  +  S+T    +  TATA    TA+  WR T + A   P  +
Sbjct: 57  TKTNSKGESETKTHTVHYTATAKHLDTAVPLWRKTDKAARLLPGKY 102


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 38  KILNCQSCMFVRAHRHH 88
           K LNCQ C FV  ++HH
Sbjct: 543 KQLNCQHCNFVTEYKHH 559


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 38  KILNCQSCMFVRAHRHH 88
           K LNCQ C FV  ++HH
Sbjct: 565 KQLNCQHCNFVTEYKHH 581


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 38  KILNCQSCMFVRAHRHH 88
           K LNCQ C FV  ++HH
Sbjct: 565 KQLNCQHCNFVTEYKHH 581


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +3

Query: 378 YSSCTVDPYCAAQTVQNYMRRFGQDC-----NGDGVVNCYDYMAIH 500
           Y +C VD Y A     + +  +G  C     N DG+   Y ++ IH
Sbjct: 86  YGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIH 131


>U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical
           protein T14E8.4 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 179 LRQPTATHKT*SQPKPLRRKYTNKKNIILKNDVYALAQT 63
           + QPT+T K     K L   YT K    LKND+    +T
Sbjct: 271 MNQPTSTQKPKVVHKFLPNPYTTKNPNTLKNDIIRTTRT 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,103,409
Number of Sequences: 27780
Number of extensions: 380450
Number of successful extensions: 822
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)