Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_H02
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    31   0.84 
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    31   1.1  
09_01_0019 + 403078-404211                                             28   7.8  

>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 344  FDALYNADACTLTSCPTEAGKTQTLDFS-LHIGKKLXTGNFEFQMEALEMKTMRARCAAT 520
            F A YN+D   L + PT +GKT   +F+ L   +K  +G  +  M  + +  + A   A 
Sbjct: 1339 FTASYNSDDSVLVAAPTGSGKTICAEFAILRNHQKAVSG--DSNMRVVYVAPIEA--LAK 1394

Query: 521  ERMSGWFSK 547
            ER   W SK
Sbjct: 1395 ERYKDWESK 1403


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 344  FDALYNADACTLTSCPTEAGKTQTLDFS-LHIGKKLXTGNFEFQMEALEMKTMRARCAAT 520
            F  LYN D   L + PT +GKT   +F+ L   +K  +G  E  M  + +  + A   A 
Sbjct: 1370 FTVLYNTDDSVLVAAPTGSGKTICAEFAILRNHQKAVSG--ESNMRVVYIAPIEA--LAK 1425

Query: 521  ERMSGWFSK 547
            ER   W  K
Sbjct: 1426 ERYRDWEQK 1434


>09_01_0019 + 403078-404211
          Length = 377

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 368 RQHCKEHQKEFQRHSSTQRGRS 303
           R+H ++ +K+  RH S+ RGRS
Sbjct: 207 RKHSRDEEKKTSRHRSSSRGRS 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,500,817
Number of Sequences: 37544
Number of extensions: 373785
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)