Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_H02
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologu... 49 5e-06
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 30 2.3
Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 28 9.3
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 9.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 9.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 9.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 9.3
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 9.3
>AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologue
protein 1 protein.
Length = 154
Score = 48.8 bits (111), Expect = 5e-06
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Frame = +2
Query: 131 EFNVVTTRLCREVDASACTVNEVRIDPCV-----NSRLCHLKKGKNAKVSFDFTPQFSTT 295
EF + ++C+ S TV++V+ D C ++C KKG + F P T
Sbjct: 16 EFIEIGYKVCK----SDGTVSQVKADGCELTVKDGKKVCLFKKGSRPIIQIAFKPSKDTD 71
Query: 296 KLKTGLFGLKNGAEIPFDALYNADACTL-TSCPTEAGKTQTLDFSLHIGKKLXTG 457
KLKT + G+ + N+DACT CP AG+ Q + S+ I + G
Sbjct: 72 KLKTSVRAKVGGSAMVDFPQTNSDACTYGVKCPVSAGENQIFEQSISITENHPAG 126
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 204 LTPVLTVDCATSRKGKTRRFLSTLH 278
LTP++T C+ KGK ++ LS+ H
Sbjct: 31 LTPIITAQCSKKPKGKKKKKLSSSH 55
>Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical
protein Y41E3.18 protein.
Length = 510
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 295 SCRELWCKVERNLRVFPFLE 236
+CRE+W +V R ++VF FL+
Sbjct: 474 NCREVWRRVRRFVKVFVFLK 493
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -3
Query: 307 GLELSCRELWCK-----VERNLRVFPFLEVAQSTVNTGV 206
G+ SC + WCK + + +F LE + T NTGV
Sbjct: 54 GIYFSCCDFWCKPYVHMSKNSFAIFNVLEETKLTQNTGV 92
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 182 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 280
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 182 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 280
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 718 PGXPPXXGGLIGXPPFNKNPXXXFXPPPXP 807
PG PP GG PP P PPP P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +1
Query: 715 GPGXPPXXGGL---IGXPPFNKNPXXXFXPPPXP 807
GP PP GGL G PP P PPP P
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 718 PGXPPXXGGLIGXPPFNKNPXXXFXPPPXP 807
PG PP GG PP P PPP P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +1
Query: 715 GPGXPPXXGGL---IGXPPFNKNPXXXFXPPPXP 807
GP PP GGL G PP P PPP P
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 718 PGXPPXXGGLIGXPPFNKNPXXXFXPPPXP 807
PG PP GG PP P PPP P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPP 329
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +1
Query: 715 GPGXPPXXGGL---IGXPPFNKNPXXXFXPPPXP 807
GP PP GGL G PP P PPP P
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 182 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 280
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,210,796
Number of Sequences: 27780
Number of extensions: 317836
Number of successful extensions: 719
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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