Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_H01
(1454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 36 0.095
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 36 0.095
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 35 0.17
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 34 0.22
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 32 0.88
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 30 4.7
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 35.5 bits (78), Expect = 0.095
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G GG G GGG CG G G GG C G G
Sbjct: 133 GGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGG 168
Score = 33.1 bits (72), Expect = 0.51
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Frame = +3
Query: 114 FYF*GXGGXGGGGGXVXXCGRXKXXGXG-----ARXGGRCXGXXGXPXVLXGSXXX*XEX 278
F F GG GGGGG CG G G A GG C G G G
Sbjct: 20 FLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPC 79
Query: 279 XXXXXXXXXRCGXGXGGXLG 338
CG G GG G
Sbjct: 80 GGGCGGGGGGCGGGGGGCGG 99
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G GG G GGG CG G G G C G G
Sbjct: 125 GGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGG 160
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 GXGGXGG-GGGXVXXCGRXKXXGXGARXGGRCXG 224
G G GG GGG CG G G GG C G
Sbjct: 140 GGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 GXGGXGGG-GGXVXXCGRXKXXGXGARXGGRCXG 224
G GG GGG GG CG G G G C G
Sbjct: 116 GCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGG 149
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 35.5 bits (78), Expect = 0.095
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G GG G GGG CG G G GG C G G
Sbjct: 133 GGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGG 168
Score = 33.1 bits (72), Expect = 0.51
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Frame = +3
Query: 114 FYF*GXGGXGGGGGXVXXCGRXKXXGXG-----ARXGGRCXGXXGXPXVLXGSXXX*XEX 278
F F GG GGGGG CG G G A GG C G G G
Sbjct: 20 FLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPC 79
Query: 279 XXXXXXXXXRCGXGXGGXLG 338
CG G GG G
Sbjct: 80 GGGCGGGGGGCGGGGGGCGG 99
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G GG G GGG CG G G G C G G
Sbjct: 125 GGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGG 160
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 GXGGXGG-GGGXVXXCGRXKXXGXGARXGGRCXG 224
G G GG GGG CG G G GG C G
Sbjct: 140 GGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 GXGGXGGG-GGXVXXCGRXKXXGXGARXGGRCXG 224
G GG GGG GG CG G G G C G
Sbjct: 116 GCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGG 149
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 34.7 bits (76), Expect = 0.17
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 114 FYF*GXGGXGGGGGXVXXCGRXKXXGXGARXGGRC 218
F F GG GGGGG CG G G GG C
Sbjct: 18 FLFPSGGGGGGGGGCGGGCGGGGGCGGGGGCGGGC 52
Score = 34.3 bits (75), Expect = 0.22
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G G GGGGG CG G G GG C G G
Sbjct: 119 GGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGG 154
Score = 33.5 bits (73), Expect = 0.38
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 126 GXGGXGGG-GGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G GG GGG GG CG G G GG C G G
Sbjct: 155 GCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGGGCG 191
Score = 33.1 bits (72), Expect = 0.51
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRCXGXXGXP 239
G GG GGGGG G G G GG C G P
Sbjct: 75 GGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPP 112
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 141 GGGGGXVXXCGRXKXXGXGARXGGRCXGXXGXP 239
GGGGG CG G G GG C G P
Sbjct: 23 GGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPP 55
Score = 29.1 bits (62), Expect = 8.2
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 126 GXGGXGGG--GGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G GG GGG GG CG G G GG C G G
Sbjct: 125 GGGGCGGGCGGGGGGGCGGGGGGGCGG-GGGGCGGGGG 161
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 34.3 bits (75), Expect = 0.22
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G GG GGG G CG G G GG C G G
Sbjct: 94 GCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCGGGGG 129
Score = 29.1 bits (62), Expect = 8.2
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRCXGXXG 233
G GG GGGG G G G GG C G G
Sbjct: 86 GGGGCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGGG 121
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 32.3 bits (70), Expect = 0.88
Identities = 21/81 (25%), Positives = 28/81 (34%)
Frame = -3
Query: 357 PXPPXPXPTPPXTPXRTXTHXXXXXXXLXXXTXQIPXTXKXXPXPPGTDRXXAXPTPXP* 178
P PP P P+P P T + +P P P T+ P P P
Sbjct: 584 PQPPSP-PSPEPEPEPKSTPEPVTDGPNESQSTALPQQTTDAPVDPVTEASPLNPQPPPP 642
Query: 177 XARIXXPRHXPXPPLXFLKNK 115
+ P P PP+ KN+
Sbjct: 643 PSPSPEPEPEPKPPVTPPKNE 663
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 126 GXGGXGGGGGXVXXCGRXKXXGXGARXGGRC 218
G GG GGGGG CG G G G C
Sbjct: 33 GGGGCGGGGGCGGGCGYGGGGGCGYGGGYGC 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,724,985
Number of Sequences: 27780
Number of extensions: 64275
Number of successful extensions: 411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4162671200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -